Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00627 ATGGACAGCTTCTTCCATTTCGACAACAGCGAAGTCAGTTTGTCTCCTGGCTTTCGTTTCCACCCTACTGATGAGGAGCTCATCACGTGCTATCTCCTAAGGAAAGTCCTTGACAACAGCTTTATTGGGGTAGCCATTGCTGAAATTGACCTCAACAAGTGTGAACCATGGGAGCTTCCAGATAAAGCTAAGATGGGTGAGAAAGAATGGTACTTCTTTAGCTTGCGTGACAGGAAGTACCCAACTGGTCTACGAACTAACAGAGCTACTGAGGCTGGTTACTGGAAAGCTACTGGCAAAGACAGAGATATTTACAGCTCCAAAAGCAGCTCTCTCATTGGAATGAAGAAGACTCTGGTGTTCTACCGAGGTAGAGCTCCTAAAGGTGAAAAGAGTAACTGGGTAATGCATGAGTACCGCCTTGAAGGAAAGTTCGCTTACCAATATCTTTCTCGCAGCTCCAAGGACGAGTGGGTCATATATCGCGTATTTCAGAAAAGCAACGGAGGTTCTGGGGGTTCTGCTACAATTTCGAGTGGCAGTGGAACAAAGAAACTGGTGAGAGTGGGCACCGGGAGTATGACTCTCTGCCGTGAACCAAGCTCTCCTTCCTCAGTCTACCTTCCGCCACTCCTTGACTCTTCTCCCTACAGCAACGCCATAACAACTCTCACTAACAATGAAACCTGCTCTTATGATAGAACCAACACAAGAGAGCACGTGTCCTGTTTCTCCAACGTGTCATCCGCTGCTTCTTCAGCCATGACCAGCCTCATCAATCCAAATTTCGTGCAATCTCCTCCAACGAACCCTCTGTCAGAACCATTTGCTCGGTTTCAGAGAAACGTTGGTGTATCAGCTTTTCCTAGCTTGAGGTCACTGCAGGACAATCTGCAGCTGCCGTTCTTTTTCACTCCTGGTGCTCAACCAATACATGGTGATCCGTTTGAATTCAGTGGATTTGGAGCTCAGGGGAGCTGGGGACAGCAAGAGCAGCATAGGGGGATGGAAGTTGTACCTCAAGCACCCATGTGTCCAACTGAGCTTGATTGCATGTGGGGCTACTGA 1068 0.4813 MDSFFHFDNSEVSLSPGFRFHPTDEELITCYLLRKVLDNSFIGVAIAEIDLNKCEPWELPDKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDRDIYSSKSSSLIGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYQYLSRSSKDEWVIYRVFQKSNGGSGGSATISSGSGTKKLVRVGTGSMTLCREPSSPSSVYLPPLLDSSPYSNAITTLTNNETCSYDRTNTREHVSCFSNVSSAASSAMTSLINPNFVQSPPTNPLSEPFARFQRNVGVSAFPSLRSLQDNLQLPFFFTPGAQPIHGDPFEFSGFGAQGSWGQQEQHRGMEVVPQAPMCPTELDCMWGY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00627 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 240 - -
Pte6g00627 355 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Pte6g00627 355 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Pte6g00627 355 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
Pte6g00627 355 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
Pte6g00627 355 FunFam NAC domain-containing protein 100-like 23 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00627 Pte-Chr6 9709716 9711591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00627 4 303 NAC Transcription Factor Family AT5G53950 56.966 7.29e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte6g00627 NAM 9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00627 - - qsa:O6P43_029134 459.914