Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00613 ATGGTGAGAGCAGCTTTTTACGACAAAAATGGAGTGAAGAAAGGTGTGTGGAGCAAAGAAGAGGACAATCTATTAAGAGCCTTTGTTGAGAGAAATGGTCACGACAATTGGCGACAGCTTCCCAGGTTAGCAGGTTTATCAAGATGTGGCAAGAGTTGCAGACTGCGCTGGAAGAACTACCTTCAACCAAATTTGAAACGGGGAAAGTTTACAAGTGAAGAGGAGGACATGATCATGAAGTTACATGAAAAGCTTGGAAACAAATGGTCAATGATTGCTGAGCAGCTAACGGGAAGGTCAGACAATGAGATAAAGAATCATTGGCATACCCACTTAAAAAAGCGTGTAAATCACAATCATATAATGAAGCCTCAAGCTGATGATCAGATGAGGGAGTTTCCCAATATTGATCAGCCACCTCAAAAATTTGAAACCATTGAATCTTCTGATTCAGAAAATTCAGATGTACCTGTGGATAACTATCCCTCTTACAGCATTTCAGGAACTTCAGCACTAAATAAGTTCCCAGCTAATATATTTTTGGAAGAGTCCTCTTTCTATTATCAATCGGCTCTACCAGCTTACGCTCCAACCTCAACATTTTCTGAAGAACAGCAACTGGTTGATTATGCTGCCCCACTGGAAATAGTTGGAGAATGGATTAGCGACGAATTCTGGACACAACCTTACCTTACAGACAAAGATATAATTCATACAATCAAGTTCGCTGACAATACTGCTCAATCTATCGATGCACAGGGAGCATAG 768 0.4062 MVRAAFYDKNGVKKGVWSKEEDNLLRAFVERNGHDNWRQLPRLAGLSRCGKSCRLRWKNYLQPNLKRGKFTSEEEDMIMKLHEKLGNKWSMIAEQLTGRSDNEIKNHWHTHLKKRVNHNHIMKPQADDQMREFPNIDQPPQKFETIESSDSENSDVPVDNYPSYSISGTSALNKFPANIFLEESSFYYQSALPAYAPTSTFSEEQQLVDYAAPLEIVGEWISDEFWTQPYLTDKDIIHTIKFADNTAQSIDAQGA* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00613 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte6g00613 255 CDD SANT 69 112 IPR001005 -
Pte6g00613 255 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte6g00613 255 Gene3D - 68 135 - -
Pte6g00613 255 SMART sant 13 63 IPR001005 -
Pte6g00613 255 SMART sant 66 114 IPR001005 -
Pte6g00613 255 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte6g00613 255 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 149 - -
Pte6g00613 255 CDD SANT 17 61 IPR001005 -
Pte6g00613 255 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte6g00613 255 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte6g00613 255 Gene3D - 6 67 - -
Pte6g00613 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte6g00613 255 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte6g00613 255 FunFam Transcription factor RAX3 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00613 Pte-Chr6 9391234 9392887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00613 1 116 MYB Transcription Factor Family AT3G61250 61.207 1.24e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g00613 Myb_DNA-binding 9.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00613 K09422 - qsu:111984716 220.32