Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00605 ATGGACCCCATCAAGAAGCGCAAGCTTGAGCAAAATGATATTGTTCCCGCTGATTCTGAGCACCAATCTTTCAATAAGCTAACCCCATCGGACGTTCGCAAAATCATCGAACGCTTCAACCACGACCAGCTCCTAGACATACTCCAAGATGCCGTCCTCCGCCATGCCGACGTTCTCGGCGCCGTACGATCTGTCGCAGATGCAGATGTAACTCAGCGCAAGCTCTTCATTCGTGGTCTTGGTTATGATACCGCCACCGATGGCCTACGCAACCTCTTCTCTACCTACGGGGAACTTGAAGAAGCTGTAGTGATACTCGATAAGGTAACTGGGAAATCCAAAGGTTATGGCTTCGTCACCTTCAAACACGTTGATGGGGCTTTGCTGGCTCTCAAAGAACCAAGCAAGATGATTGATGGGCGCGTGACCGTCACGCAGCTAGCAGCGGCTGGGAATTCCGGTTCCAATAGTAACCCGATTGATATCTCGTTGAGGAAAATCTATGTTGCTAATGTGCCGCCCGATCTATCAGCGGATAAGTTGTTAGCTCACTTTTCCTTCTATGGTGAAATTGAAGAAGGGCCCTTGGGTTTTGATAAGCAGACAGGTAAGTCAAAAGGGTTTGCTTTGTTTGTGTACAAGACTGCAGAGGGTGCTCAAGCTGCGCTTGTCGACCCGGTGAAGATGGTAGAGGGTAAGCAACTCAACTGTAAGTTGGCTATGACGGATAATAAGAAAGGGAAGCAAGGAGGTGGGGCTGATGGAGTATATGGACATCGGAATGGTCATGGAGATGGCATGGTTATGCCGCCACCGCCATCTTCAGTTACAGGTCAGTATGGTGGCGCGGGGGGCTTGGGGTCATATTCTGGATATGGAGGTGCGCTCCCAGGGCAGCCTCCAATTGGTAATCATCCAATGAATCCATCCTATGGTGGACCGGGTTTGACGTCAATGGGCAATCAGCCACCGTCTTCTCTGGGTGTTACTGGTGGATATGGTTCTGGGCTTGGTGGACATTTTGGTAGTTATGGTGTGTCTGGTGCGGGTAGTTATGGTGGATTGAGTGGTTCAGGGGCGGGTATCTACGGTGGTGGTAGTGGTGCAGGCTTTGGTGCTTCGAGTGGTGGGCTGAGTGGTGCTACTGCTGGCTCTGCGCCTTCTCTATACAGATTGCCTCCAAGTTCTACTGGAATGCCCTCTAGTGCATATCCAGAGACTGCACTTAATAGTTTGTCATCGTCTGCTGTGTATCCAGGACAGCAACCTGCTGGAGCTTCACCAGTGCCCAGGGTTCCGACGGGTGGGATTTACCCTAATGCACCTCCATACTTCTGA 1338 0.5097 MDPIKKRKLEQNDIVPADSEHQSFNKLTPSDVRKIIERFNHDQLLDILQDAVLRHADVLGAVRSVADADVTQRKLFIRGLGYDTATDGLRNLFSTYGELEEAVVILDKVTGKSKGYGFVTFKHVDGALLALKEPSKMIDGRVTVTQLAAAGNSGSNSNPIDISLRKIYVANVPPDLSADKLLAHFSFYGEIEEGPLGFDKQTGKSKGFALFVYKTAEGAQAALVDPVKMVEGKQLNCKLAMTDNKKGKQGGGADGVYGHRNGHGDGMVMPPPPSSVTGQYGGAGGLGSYSGYGGALPGQPPIGNHPMNPSYGGPGLTSMGNQPPSSLGVTGGYGSGLGGHFGSYGVSGAGSYGGLSGSGAGIYGGGSGAGFGASSGGLSGATAGSAPSLYRLPPSSTGMPSSAYPETALNSLSSSAVYPGQQPAGASPVPRVPTGGIYPNAPPYF* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00605 445 SMART rrm1_1 74 146 IPR000504 GO:0003723
Pte6g00605 445 SMART rrm1_1 166 238 IPR000504 GO:0003723
Pte6g00605 445 SUPERFAMILY RNA-binding domain, RBD 155 265 IPR035979 GO:0003676
Pte6g00605 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 167 IPR000504 GO:0003723
Pte6g00605 445 SUPERFAMILY RNA-binding domain, RBD 67 150 IPR035979 GO:0003676
Pte6g00605 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Pte6g00605 445 PANTHER GEO13361P1-RELATED 57 306 - -
Pte6g00605 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 224 IPR000504 GO:0003723
Pte6g00605 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Pte6g00605 445 Gene3D - 60 159 IPR012677 -
Pte6g00605 445 Gene3D - 161 267 IPR012677 -
Pte6g00605 445 FunFam UBP1-associated protein 2C isoform A 56 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00605 Pte-Chr6 9045721 9047058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00605 161 333 C2H2 Transcription Factor Family AT2G19380 30.151 1.47e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00605 K12741 - qsa:O6P43_001025 541.576