Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00601 ATGGATCGGATAATTGAGTCGGATATGGATCAGCACTCTACAGGTTATTTCCATGCTGAACCTTGCATTGTCAGGACAGGCTCTACCAGCATTGCACAGCCAAATATGTGCACAGTAGTGGCTCCCACAGGGAACACGGCTCCTTTTGATCCTCGTCATATCCCTGAACACTATGCTAATGCTATGATGCATAGGGTGACACGATACAATGCTATGCGCCATCAGCAGAATCTTGACTTGAATTTATATCACTCCGGCATGCTTGCCCCTTTTACTGGTGCACTACCTGCCCCTCTGAGTCATGGAGCTCGGGGTCAGTTGTTAGCTTCAAGCTCCTATTCAGTTGCTGGTGTTGGTTCAGATAATGCTGGAAGCAGCATTCACTTAGTGGATGACGTTCGAGGTCCGTGCAAGAGAAAAAATGAGGGCTTTCAGTATTATAATGCATCTGCAAGTTCCAGCTCTGCAGTTGCTCCTCAGCTCATCAGACATCCGGATGGAAGTGCCATAAGGGATGCGTCATCTTTCTCTGTACCTCAATTTAGAGGAAGCAGCGCTGCTTCACTTATGGAGGCAGGACCTCAAACAAATCTCTGGACTAGGTCTGCTGATTCAGTTATGGTGCCAGACAATAGCAACTTGATTCGAGGAAACTACATGGGGCAATGCTTCCAGCCAGCTACTGGTCCCTGGATTGATCAACACTTGAGCACTAATAATATTGATGGGCACAATGCTGCTTGGAATCCATCTCTTTCTGTGCCATATGTACAAGCAACCAACGTTAGCAGAAGTACCTTAGAAAGTGGGAACATGGGTTTGCCAAGATATCACGAGACAGCTAACAATATAGGTGGACCGAGGTTTCTACCTCATCCTCCTATGAACCAGCACCGCCACCATCATGGATACCATCCTTCATCCCTGCAAATGCAAGTTGGGAGAACCCAAAATTTAAACTTTCATCCTCATTTAATCACAAACTTGTATGGGAATCCATCGTATCCTACACAGAGCACTGTTCCTCCTGTGCAGAACAGTTTTGAGACGACTGCTCGGCATCTGTGGCCTGTACCTCAAGATGGCACATGGGCATACCATCCTAACAGAAGCGGTGCCATGATTGAAACAAATCTTGGACACCATAATGCGGCACGGTTAAGAGTCCTCCCTTCTGAAGACGTAGCTCTTGTAGAACTGCAAGAATATTATGAAGCGGGTGATCTGATTGATCATCACAGGGATATGCGCCTGGACATAGACCACATGTCTTACGAGGAGCTGCTTGCATTGGGAGAGTGGATTGGCAATGTGAACACTGGTTTATCAGAGGAGACGATCATGAATAGATTGATAACAAAAACTTATTTAGCAGCTCCAACTGCTATCAATTTGGAAGAGGCGGCCAGTGAAGAACTAGAAACTGATTCATGTATCATATGCCAGGAGGAGTACAAAAATCGAGAGAAGATCGGATTTCTTGAATGTGGGCACGAGTACCATATGGACTGCTTGAAGAAATGGTTGCTTGTGAAAAATGTCTGTCCGATATGCAAAAAAGAAGCGCTGACCACTGGGAAGAAGGATGTACGTAAGTAG 1599 0.459 MDRIIESDMDQHSTGYFHAEPCIVRTGSTSIAQPNMCTVVAPTGNTAPFDPRHIPEHYANAMMHRVTRYNAMRHQQNLDLNLYHSGMLAPFTGALPAPLSHGARGQLLASSSYSVAGVGSDNAGSSIHLVDDVRGPCKRKNEGFQYYNASASSSSAVAPQLIRHPDGSAIRDASSFSVPQFRGSSAASLMEAGPQTNLWTRSADSVMVPDNSNLIRGNYMGQCFQPATGPWIDQHLSTNNIDGHNAAWNPSLSVPYVQATNVSRSTLESGNMGLPRYHETANNIGGPRFLPHPPMNQHRHHHGYHPSSLQMQVGRTQNLNFHPHLITNLYGNPSYPTQSTVPPVQNSFETTARHLWPVPQDGTWAYHPNRSGAMIETNLGHHNAARLRVLPSEDVALVELQEYYEAGDLIDHHRDMRLDIDHMSYEELLALGEWIGNVNTGLSEETIMNRLITKTYLAAPTAINLEEAASEELETDSCIICQEEYKNREKIGFLECGHEYHMDCLKKWLLVKNVCPICKKEALTTGKKDVRK* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00601 532 FunFam E3 ubiquitin ligase BIG BROTHER 438 523 - -
Pte6g00601 532 Pfam Ring finger domain 476 519 IPR001841 -
Pte6g00601 532 SUPERFAMILY RING/U-box 472 523 - -
Pte6g00601 532 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 133 523 IPR045191 GO:0061630
Pte6g00601 532 ProSiteProfiles Zinc finger RING-type profile. 478 519 IPR001841 -
Pte6g00601 532 SMART ring_2 478 518 IPR001841 -
Pte6g00601 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 441 523 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00601 Pte-Chr6 9009476 9015700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00601 382 525 C3H Transcription Factor Family AT2G15530 46.897 2.49e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00601 K19041 - qsa:O6P43_001011 584.719