Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00600 ATGTCGTTGAGGAAAGTTTTTGGTTCTCGGAGGTCCTCCAGATCGTTCAAGGAGACAAGGGGTACGGAGGAAGATCAGGGCAGGAACAGAGTTGTTCCTAATTCTGTTGAGCAAGATGAGTATGGGATCTCGTGGTCTTCCTTATTGCCTGAGCTCCTTGGAGAGATCATACAGCGAGTGGAGGCCAGCGAAGACCGGTGGCCTCAACGACAAAACGTTGTCGCTTGTGCTTGTGTATGTAAAAGATGGAGATATATAACCAAAGAGATCGCAAGCTCTCGTACTAACACTGGCAAAATCACTTTCCCTCCATGTCTCAAACAGCCAGGACCTCGGGACTTACCTAATCAATGCCTCATTAAGCGGAACAAGAAAACCTCAACATTCTACCTATATCTTGGCCTTACTCCATCGTTCACAGACAAAGGAAAGTTTCTACTGGCTGCTAGAAGGTTTAGACATGGGGCTCACACAGAATATATCATATCACTTGATGCTGATGACATATCCCAAGGAAGTAATGCATACGTTGGAAAGTTAAGATCGGATTTTCTTGGCACCAACTTCACAATCTACGACAGCAAACCACCTCACATTGGGGCGATGCCATCCAATTGCAGGTCAAGCCGCCGGTTTGCCAGTAAGCAAATAAGTCCTCAAGTTCCAGCAGGTAACTTTGAGGTGGGGCATGTATCGTACAAGTTTAATCTCTTGAAATCAAGGGGTCCACGCAGGATGATTTGCTCCATGAAGTGCCCAACATCAGAAGATACATCTGACAGCAAATCACATTACAACCGTAAGATGAGCAAGGCAGAACTTGCCAGCTCCGGATATACAGTATTGAGGAACAAAGCGCCCAGGTGGCATGAGCATCTGCAGTGCTGGTGCTTAAATTTTCATGGTCGTGTAACGGTTGCATCAGTGAAGAATTTTCAACTGGTTGCAACTGTTGATCCTTGCCAGCCAGGTGGCAGAGGGGATGAGGAGACCGTTCTCCAGTTTGGGAAGGTAGGGGATGATGTTTTCACCATGGACTACAGACAGCCTCTGTCTGCCTTCCAGGCCTTTGCCATGTGCCTTACAAGCTTTGGTACAAAACTCGCATGTGAATAA 1116 0.4686 MSLRKVFGSRRSSRSFKETRGTEEDQGRNRVVPNSVEQDEYGISWSSLLPELLGEIIQRVEASEDRWPQRQNVVACACVCKRWRYITKEIASSRTNTGKITFPPCLKQPGPRDLPNQCLIKRNKKTSTFYLYLGLTPSFTDKGKFLLAARRFRHGAHTEYIISLDADDISQGSNAYVGKLRSDFLGTNFTIYDSKPPHIGAMPSNCRSSRRFASKQISPQVPAGNFEVGHVSYKFNLLKSRGPRRMICSMKCPTSEDTSDSKSHYNRKMSKAELASSGYTVLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDPCQPGGRGDEETVLQFGKVGDDVFTMDYRQPLSAFQAFAMCLTSFGTKLACE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00600 371 PANTHER TUBBY-RELATED 27 369 - -
Pte6g00600 371 Pfam F-box domain 45 90 IPR001810 GO:0005515
Pte6g00600 371 Pfam Tub family 106 366 IPR000007 -
Pte6g00600 371 MobiDBLite consensus disorder prediction 11 27 - -
Pte6g00600 371 Gene3D Tubby Protein; Chain A 102 371 IPR025659 -
Pte6g00600 371 MobiDBLite consensus disorder prediction 1 32 - -
Pte6g00600 371 CDD F-box_AtTLP-like 45 89 - -
Pte6g00600 371 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Pte6g00600 371 PRINTS Tubby superfamily signature 282 299 IPR000007 -
Pte6g00600 371 PRINTS Tubby superfamily signature 300 316 IPR000007 -
Pte6g00600 371 PRINTS Tubby superfamily signature 160 176 IPR000007 -
Pte6g00600 371 PRINTS Tubby superfamily signature 328 347 IPR000007 -
Pte6g00600 371 PRINTS Tubby superfamily signature 349 371 IPR000007 -
Pte6g00600 371 PRINTS Tubby superfamily signature 225 252 IPR000007 -
Pte6g00600 371 SUPERFAMILY Tubby C-terminal domain-like 97 371 IPR025659 -
Pte6g00600 371 Gene3D - 38 94 - -
Pte6g00600 371 ProSitePatterns Tub family signature 1. 300 313 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00600 Pte-Chr6 9002390 9005216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00600 1 372 TUB Transcription Factor Family AT1G53320 71.654 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte6g00600 Tub 1.3e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00600 K19600 - qsa:O6P43_001049 629.787