Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00580 ATGACATCTTCGTCACATAAAATCATCCTCACCAGCTCTCCTGATGGCCCCATTATTGCCTATGATGGTTCTACTGGCAACCCTCTAGCCCACTTCTCTGGCAGCAGATCACCGAGAAGGGGTATTGCTGTCCTGGGTGATACATATATAGCTGTCTCTCACGTGTCCTCTGACTCAGTTGCAGGGTCAATTCACCTCTATAATTGGTACACTTCCACTGCCTTCCACAACATTCCAGTCCCTGAGCCTGTTGCTCCACTTGCTGCTACTCCTGATGGCTGCTACCTACTGGCTGGTGGGTTATCAGGAAGTGTACATGCTCTCTCAATGCCTACTGGGGATATCCTCATGTCTTTTCCTGTGCACAAAAGGCCTATCACTTGCCTTGAATTCAACGATGACGGATCTCTTGTTATATCAGGTAGTGACGATGGTACCATTTTTGTCATTCCTATTTTTCAACTTGTAGAGGCGTCGGAGGTTAAGAATTCATGTAACTATACGTTGCATGAACTCGTAGCTCATTCGAATTCAGTGACTGCCATCACCACTGGAATGGGGATGGCTAACTCTACTTTTATCTCATGCTCATTGGATTGTACATGTAAGTGTTGGAGTCTGATACAAGGAACACTTCTACGGACAGTGGCATTCCCTTGCTCTATTTTTGATGTCGCTTTAGACCCAACGGAATGGGAGTTTTATGCTGCAGGATCAGATGGGTTGATTTACAAGGTTCCAATGAAAACTGGAAGCAGACAACTTGGGAATCCAGGTCATGACACTTGGAATAAAAAACACGATGCTCCGATTGTATCGTTGAGAATAGTCAATGAGGGACAGAGTTTGGTGTCTGCGGCAGATGATGGGAGTGTTTGGCTATGGGATATAGAATCTGGGGAGGTCATTTTGGTTCTTGGAAATGGTGTAGGAAGCATTAGCGATATGATGGTAGCCAAAGGGGTCTGCAATGGCAATGGTTATAAAAATGGACTTGATACAGGCATTGCAGAAGTTCAAAGTTTTATAGTTCGATTATCTGAGCAAGAACTCTTCAGACCTGTGAGGGAAACGAGAGAACTTGAAGATCTTATGACGTTGGCGGCAAGTGATAGGAGAAGAGCCATTGATATGCTCGAGTCTGCCATTGAAATGTACGAGAAGCTTTTGGAACTTATCCTGGAAGAGGCCAGCAGGAACTAG 1203 0.4505 MTSSSHKIILTSSPDGPIIAYDGSTGNPLAHFSGSRSPRRGIAVLGDTYIAVSHVSSDSVAGSIHLYNWYTSTAFHNIPVPEPVAPLAATPDGCYLLAGGLSGSVHALSMPTGDILMSFPVHKRPITCLEFNDDGSLVISGSDDGTIFVIPIFQLVEASEVKNSCNYTLHELVAHSNSVTAITTGMGMANSTFISCSLDCTCKCWSLIQGTLLRTVAFPCSIFDVALDPTEWEFYAAGSDGLIYKVPMKTGSRQLGNPGHDTWNKKHDAPIVSLRIVNEGQSLVSAADDGSVWLWDIESGEVILVLGNGVGSISDMMVAKGVCNGNGYKNGLDTGIAEVQSFIVRLSEQELFRPVRETRELEDLMTLAASDRRRAIDMLESAIEMYEKLLELILEEASRN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00580 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Pte6g00580 400 PANTHER WD-REPEAT PROTEIN 18 8 394 IPR045227 -
Pte6g00580 400 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 301 - -
Pte6g00580 400 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
Pte6g00580 400 Pfam WD domain, G-beta repeat 168 206 IPR001680 GO:0005515
Pte6g00580 400 Pfam WD domain, G-beta repeat 267 296 IPR001680 GO:0005515
Pte6g00580 400 Pfam WD domain, G-beta repeat 114 149 IPR001680 GO:0005515
Pte6g00580 400 Gene3D - 166 327 IPR015943 GO:0005515
Pte6g00580 400 Gene3D - 2 165 IPR015943 GO:0005515
Pte6g00580 400 SMART WD40_4 209 247 IPR001680 GO:0005515
Pte6g00580 400 SMART WD40_4 25 68 IPR001680 GO:0005515
Pte6g00580 400 SMART WD40_4 257 296 IPR001680 GO:0005515
Pte6g00580 400 SMART WD40_4 112 151 IPR001680 GO:0005515
Pte6g00580 400 SMART WD40_4 162 206 IPR001680 GO:0005515
Pte6g00580 400 SMART WD40_4 71 109 IPR001680 GO:0005515
Pte6g00580 400 ProSitePatterns Trp-Asp (WD) repeats signature. 283 297 IPR019775 -
Pte6g00580 400 Coils Coil 376 396 - -
Pte6g00580 400 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 301 IPR011047 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00580 96 298 U-box Gene Family AT1G04510 28.972 8.25e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00580 K14829 - jre:109011798 483.026