Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00579 ATGAAGATTCAGTGTAACGTTTGTGAAGCAGCTGAGGCTACGGTTTTATGTTGTGCAGATGAAGCTGCTTTGTGTTGTGATTGTGACCAGAAGATTCACGCAGCTAATAAGCTTGCAAGTAAGCACCAGAGGGTTCCATTGTATAGCTCTTCATCTCAGATGCCCAAGTGTGATATCTGTCAGGATGCAGTTGGCTACTTCTTTTGTCTCGAAGATCGTGCTTTACTATGCAGAAAATGTGATGTTGGTATACACACTGCTAATGCATTTGTTGCAGCACATAGGAGATTTCTGCTAACTGGTGTAAAAGTGGGTCTTGACGCTTCAGAGCCCGTTGCTGCAACTTCATCAGTTAAATCTCATTCTACTGATATGGTTTCAGAGGCAAAATCTTCTCCAGTATCTAGAAAGACTTTGTCAATACCACTGTCCCATGAACAAAATGAGCCATTACCTGTCCATGTTGGTGCAGTTGAGGAGTTTAGACCTAGTAAGCTTTCATATTCTGGCGGTTCTTTTGGTTCTGTAGCTGGAGGCATTTCACAATGGCCTTTAGATGAATTTCTCGGGCTCAGCGATTTCTCTCAGAGTTTCAATTACATGGACAATGGGTCATCCAAGGCCGACAGTGGTAAGCTTGGAGAATCAGATTCATCCATACTGAAATCTGGTGAAGAAGAGCAGGATGATGATAAATGCTTGGGTTGTGTTCCTGATTCATCTTGGACAGTACCTCAGATGCCTTCCCCACCCACAGCTTCAGGGTTATATTGGCCAAAGAACCCTCAGAACTCATCCGACATCACCACGTTTGTTCCTGACATTTCCTCTTATCACATACACAAGCGGCAAAACCCACGGCATGTTAGTGGTAATAGATCAAGAAGACAGCGACTCTTCTAG 903 0.4374 MKIQCNVCEAAEATVLCCADEAALCCDCDQKIHAANKLASKHQRVPLYSSSSQMPKCDICQDAVGYFFCLEDRALLCRKCDVGIHTANAFVAAHRRFLLTGVKVGLDASEPVAATSSVKSHSTDMVSEAKSSPVSRKTLSIPLSHEQNEPLPVHVGAVEEFRPSKLSYSGGSFGSVAGGISQWPLDEFLGLSDFSQSFNYMDNGSSKADSGKLGESDSSILKSGEEEQDDDKCLGCVPDSSWTVPQMPSPPTASGLYWPKNPQNSSDITTFVPDISSYHIHKRQNPRHVSGNRSRRQRLF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00579 300 CDD Bbox1_BBX-like 5 47 - -
Pte6g00579 300 FunFam B-box zinc finger protein 22 1 93 - -
Pte6g00579 300 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pte6g00579 300 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 276 - -
Pte6g00579 300 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Pte6g00579 300 Gene3D Classic Zinc Finger 1 93 - -
Pte6g00579 300 SUPERFAMILY B-box zinc-binding domain 45 88 - -
Pte6g00579 300 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pte6g00579 300 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pte6g00579 300 MobiDBLite consensus disorder prediction 204 233 - -
Pte6g00579 300 MobiDBLite consensus disorder prediction 219 233 - -
Pte6g00579 300 CDD Bbox1_BBX-like 56 99 - -
Pte6g00579 300 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00579 Pte-Chr6 8242436 8246577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00579 1 296 C2C2-CO-like Transcription Factor Family AT1G78600 48.036 2.84e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte6g00579 zf-B_box 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00579 - - qsa:O6P43_001094 397.512