Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00566 ATGGCAAGCAACCCAAACAACAACTTCTCTCCTTGGCTTCAAAGTTCGCCAATTCCCAGCAGGGGTTATGATGCTATTGCTAGCCATCCTTATGACAATGAGTCCACTGAGCTGCCTGTCTTCTACCGAACTCGCTCCTCTCAAGCGACAGCAGGAACAACAGAAGGTGGAGTTGATCATATCAGGGGACTTATGGACGAATTTGGATTGCCTCCAGGATTCTTTACCTTATCTAGTCTTCCAGGACGACAGCAAAGTGGAACCAGAGTTGTGGCTGTTAACAATGACAGGAGAGGCTTGATCAACCCCAGACATAGACAGGTTTTCCAACAGGAATCAACTCCAAGAAGTATTGGCCAAACTAGTTTTCGATTTCCAAGATTTATCGACCAAACAAGGTTCCAATTGCCAACCTTTGAAGAGACCCCCAGGTTGACGAAAGATGAGCAAGATGAAGCCTTGAGAAAGCTTAAGAAAGAAAAGTATAGCCCTGCAAGCTCAAGGAGTTTGCCAAAAAGGCCGAGCTTAAATTATAGGAACCTTGCAAAGAATGAAGAGAAAGCAATGGAAATGGGATCTGAAGATGGAAAGAGCTGTGCAATTTGCTTGGAAGACTTCAAACCTGGAGAGCAGGTGGTGGTCACCCCATGCAAGCATATGTTTCATGAAGACTGCGTAGTGCCATGGGTGAAGAGTCAGGGACAGTGTCCTGTGTGTAGGTTAGCAATCTACGAAACAGCTAGGGCAAACCCAACATCCTCGAACATCAACCATGTTCACGGTTCTCTTCTAAGGGCTATGAATGGATTTTGCATTTGA 819 0.4554 MASNPNNNFSPWLQSSPIPSRGYDAIASHPYDNESTELPVFYRTRSSQATAGTTEGGVDHIRGLMDEFGLPPGFFTLSSLPGRQQSGTRVVAVNNDRRGLINPRHRQVFQQESTPRSIGQTSFRFPRFIDQTRFQLPTFEETPRLTKDEQDEALRKLKKEKYSPASSRSLPKRPSLNYRNLAKNEEKAMEMGSEDGKSCAICLEDFKPGEQVVVTPCKHMFHEDCVVPWVKSQGQCPVCRLAIYETARANPTSSNINHVHGSLLRAMNGFCI* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00566 272 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
Pte6g00566 272 SMART ring_2 199 239 IPR001841 -
Pte6g00566 272 SUPERFAMILY RING/U-box 198 251 - -
Pte6g00566 272 PANTHER SI:CH211-59O9.10 147 244 - -
Pte6g00566 272 MobiDBLite consensus disorder prediction 157 177 - -
Pte6g00566 272 Pfam Ring finger domain 198 240 IPR001841 -
Pte6g00566 272 FunFam RING/U-box superfamily protein 182 257 - -
Pte6g00566 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 244 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00566 Pte-Chr6 7309567 7310807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00566 148 250 C3H Transcription Factor Family AT3G58720 47.664 3.55e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00566 - - qsa:O6P43_000839 219.164