Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00561 ATGATGTCAAGGTCGTATACTAATCTTCTAGATTTGGCTTCTGGTAATTTCCCGGCAATTGGAAGTGGTTTTAAGGAACGGAAGCGGCTTCCAAGGGTCATGACTGTCCCAGGAAACATTGCAGAGCTTGATGACGATCAGGCGCATAGTGTTTCTTCTGAAAATCCGTCAACAACTACTACAGATCGGATGATCATCGTAGCTAACCAGCTACCACTAAAAGCAAAAAAGAGAGATGATAATAAAGGATGGGATTTTAGTTGGAATGAGGATTCTTTGCTTTTACAACTTAAGGATGGGCTTCCAGAAGAAATGGAGGTCATTTATGTAGGTTCATTGCGAGTTGATGTTGATCCAAACGAACAAGATGATGTTTCCCAGGTTTTATTGGATAGATTTAAATGTGTTCCTACATTTCTGCCCCCCGATGTTTTGGAAAAATTCTATGATGGCTTCTGTAAGAGGCATCTGTGGCCACTTTTCCATTACATGCTACCCTTTTCAGCTGATAAAGCACACCGTTTTGATCGGTCTTTGTGGGAAGCTTATGTGTCGGCGAATAAATTATTTTTCCAGAAAGTTGTTGAAGTAATAAATCCTGAAGATGACTATATATGGATTCACGATTATCATTTGATGGTGCTGCCTACCTTTATAAGAAGACGATTTAACAGAGTAAAAATGGGCTTTTTCCTGCATAGCCCTTTTCCTTCTTCGGAGATATATAGGACTCTTCCTGTAAGGGAGGAGATACTAAAGGCTTTACTTAACTCTGATATCATTGGCTTTCACACCTTTGACTATGCTCGCCATTTCCTTTCTTGCTGCAGTCGCATGTTGGGTTTGGAGTATCAGTCTAAACGGGGCTACCTGGGATTAGAATATTATGGGAGAACTATCAGCATCAAGATCATGCCAGTTGGGATTCACATGGGTAGGATTGAATCTGTGATGAAAATGGCAGATGAGGAGAGTAAACTGAGGGAGCTCAGACAGCAATTTGAAGCAAAAACAGTGTTACTTGGTGTTGATGATATGGACATTTTTAAAGGTATTAATTTGAAACTTTTGGCAATGGAACAGATGCTCAGTCAGCATCCTGAGTGGCAGGGTAGAGCCGTACTGGTTCAGATAGTAAACCCTCCTAGGGATAAAGGAACACATTTAGAAAACGTAAGGACTGAAATAAATGAAATATGCAGTAGGATAAACAGAATATATGGCCGGCCTGGCTACGATCCAATAGTCTTTATTGACAGATCAGTTTCAATTGCTGAAAAAGTTGCCTACTACAGCATTGCTGAGTGTGTTGTTGTTACAGCTGTCAGGGATGGGATGAACTTAACTCCTTATGAATATATCGCCTGCAGGCAGGGAACATCTGTTACTAGTCCCAAAAAGAGCATGCTTGTAATATCAGAATTTATTGGATGTTCTCCATCACTTAGTGGAGCTATCCGGGTGAATCCATGGAATGTTGAATCAACTGCAGAAGCACTGAACGAGTCTATATCAATGGCTGATTCAGAAAAGCAGCTGCGGCATGAAAAGCATTACCGCTATATCAGCACTCATGATGTAGCATTTTGGTCCCGCAGTTTCTTGCAGGATATGGAGCGGGCTTGCACAGACCTTCTAAGGAAACGGTGCTGGGGAATTGGTTTCAGCTTTGGGTTCAGAGTCGTGGCCCTTGACCCTAACTTTAGAAAGCTGTCAATTGATGCTATTGTATCATCTTATAAAAGGGCAAAGAATAGAGCTATTTTGTTAGATTATGATGGCACTGTAATACCGCAGAACTCCATTAACAAGTCACCGAGTGAGGAGGTTATCTCTATTCTGGACACTCTTTGTGCAGACCCGAAAAATGTAGTCTTCATTGTGAGTGGAAGAGGGAGGGGAAGCTTGAGTAATTGGTTTTCACCCTGCAAGAAGCTTGGTATTGCAGCGGAACACGGATACTTCATAAGATGGGCACAAAATGAAGAATGGGAAACCTGTGGTAAGAGCTCCGACTTTGGATGGATGCAGATTGTAGAACCTGTGATGAAATTGTATACAGAGTCCACTGATGGTTCTTGCGTCGAAACTAAGGAAAGTGCTTTGGTTTGGCAGTACCGGGATGCAGATCAAGGGTTTGGATCAGCTCAGGCTAAAGAATTGTTAGATCATCTGGAGAGTGTTCTGGCAAATGAACCAGTCGCCGTTAAAAGTGGCCAGTTTATCGTTGAAGTAAAACCGCAGGTATGGCTTCCTTTTTTATATCTTAAATATAATTCTACTTTATGGCATCTAGCGAGGATAGCACAATTCGCAAACTTTTTTTGA 2328 0.4158 MMSRSYTNLLDLASGNFPAIGSGFKERKRLPRVMTVPGNIAELDDDQAHSVSSENPSTTTTDRMIIVANQLPLKAKKRDDNKGWDFSWNEDSLLLQLKDGLPEEMEVIYVGSLRVDVDPNEQDDVSQVLLDRFKCVPTFLPPDVLEKFYDGFCKRHLWPLFHYMLPFSADKAHRFDRSLWEAYVSANKLFFQKVVEVINPEDDYIWIHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMKMADEESKLRELRQQFEAKTVLLGVDDMDIFKGINLKLLAMEQMLSQHPEWQGRAVLVQIVNPPRDKGTHLENVRTEINEICSRINRIYGRPGYDPIVFIDRSVSIAEKVAYYSIAECVVVTAVRDGMNLTPYEYIACRQGTSVTSPKKSMLVISEFIGCSPSLSGAIRVNPWNVESTAEALNESISMADSEKQLRHEKHYRYISTHDVAFWSRSFLQDMERACTDLLRKRCWGIGFSFGFRVVALDPNFRKLSIDAIVSSYKRAKNRAILLDYDGTVIPQNSINKSPSEEVISILDTLCADPKNVVFIVSGRGRGSLSNWFSPCKKLGIAAEHGYFIRWAQNEEWETCGKSSDFGWMQIVEPVMKLYTESTDGSCVETKESALVWQYRDADQGFGSAQAKELLDHLESVLANEPVAVKSGQFIVEVKPQVWLPFLYLKYNSTLWHLARIAQFANFF* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00561 775 FunFam Alpha,alpha-trehalose-phosphate synthase 317 523 - -
Pte6g00561 775 FunFam Trehalose-6-phosphate synthase 2 669 748 - -
Pte6g00561 775 NCBIfam trehalose-phosphatase 583 750 IPR003337 GO:0003824|GO:0005992
Pte6g00561 775 Gene3D Glycogen Phosphorylase B; 55 316 - -
Pte6g00561 775 SUPERFAMILY HAD-like 586 748 IPR036412 -
Pte6g00561 775 Gene3D Glycogen Phosphorylase B; 317 523 - -
Pte6g00561 775 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 31 749 IPR001830 GO:0003824|GO:0005992
Pte6g00561 775 Pfam Trehalose-phosphatase 589 749 IPR003337 GO:0003824|GO:0005992
Pte6g00561 775 CDD GT20_TPS 63 539 IPR001830 GO:0003824|GO:0005992
Pte6g00561 775 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 585 702 - -
Pte6g00561 775 Gene3D - 588 668 IPR023214 -
Pte6g00561 775 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 315 - -
Pte6g00561 775 Gene3D - 669 748 - -
Pte6g00561 775 Pfam Glycosyltransferase family 20 63 539 IPR001830 GO:0003824|GO:0005992
Pte6g00561 775 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00561 Pte-Chr6 7272963 7276425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00561 1 748 Trehalose Biosynthesis Gene Families AT1G06410 78.088 0.0 1248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00561 K16055 - qsa:O6P43_028934 1359.74