Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00558 ATGGCCTTCGATAATCTGACTGAGCTCTATGAAAATGTGTCTCTATCTGGGGGTTCAGTTCAAAGTGTTGTAGCTTATTTTGCAGATGGACTGACAGCAAGGCTTCTCAAAAGAAAGTCTCCCTTTTACGATATTCTCATTAAGGAACCAACATATGAAGCAGAATTCCAATCATTTACCGACCTCTACCGGGTTTCGCCGTACTACCAATTTGCTCATTTTACAGCAAATCAAGCAATCATAGAAGCCTTTGAGAGTGAAGAACATTGGAACAGTGGCACCTTGCATGTGATCGATTTCGATGTCTCATATGGCTTTCAATGGCTGTCTCTTATTCAGTCACTTTCAGAAAAGGCATCAAGTATCAATAGAATATCTCTTAAGATTACTGGGTTTGGAGCAAACATTCAGCAACTCCAGGAAACCGAGTTGAAATTGGTTAATTTAACATGA 453 0.3974 MAFDNLTELYENVSLSGGSVQSVVAYFADGLTARLLKRKSPFYDILIKEPTYEAEFQSFTDLYRVSPYYQFAHFTANQAIIEAFESEEHWNSGTLHVIDFDVSYGFQWLSLIQSLSEKASSINRISLKITGFGANIQQLQETELKLVNLT* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00558 150 ProSiteProfiles GRAS family profile. 1 150 IPR005202 -
Pte6g00558 150 Pfam GRAS domain family 3 148 IPR005202 -
Pte6g00558 150 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 148 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00558 Pte-Chr6 7246519 7246971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00558 1 133 GRAS Transcription Factor Family AT2G04890 37.313 6.59e-20 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte6g00558 GRAS 3.6e-34 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00558 - - pop:7467433 221.861