Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00557 ATGGGAAGGGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTTACTTTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCTAACCGTGGCAAGCTTTATGAGTTCTGCAGCAGCCCTAGTGTTCTAAATTTCGGTATGCTTTAA 210 0.4286 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSVLNFGML* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00557 69 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Pte6g00557 69 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte6g00557 69 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte6g00557 69 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte6g00557 69 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte6g00557 69 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte6g00557 69 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte6g00557 69 FunFam MADS-box transcription factor MADS-MC 13 66 - -
Pte6g00557 69 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte6g00557 69 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
Pte6g00557 69 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Pte6g00557 69 Gene3D - 13 66 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00557 Pte-Chr6 7167103 7167429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00557 1 62 MADS-box Gene Family AT2G03710 95.161 9.83e-40 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte6g00557 SRF-TF 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00557 K09264 - qsa:O6P43_009196 126.716