Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00556 ATGAGTTCATCCCAAAAGCCAGACATCACACTTTCCTTAACACTATCATCCCCACCAAACACACAGCCTCAATCCATGAAGCCTGAAGAGAGAGGCATACGTTTAATACAGCTTCTCTTGGCATGTGCTAATCATGCTTCCTCCGGCAATCTCCATCGTGCCGATTCATGTCTCCGCCAGATATCTCAGCTATCGTCTATGGCCGGCGACTCCATGCAGCGACTGGCAGCATGGTTTGCCTCAGCGCTAGCAATAAAACTTGTGACCCGCTGGCCTGGCATATACAAAGCACTCATTCATCCTCAGTTGTCTACGCAATATGATCTCCACGGACTTGCTCCAGCTCAGTCTACTTTCTCACAAGCCCTTCCCTACTTGGGATTTGCCTATTCAGTCATCGCAAGGACCTTGCATCGATCCATGCTAAAGGAACCAATCATTCACATCGTAGCCTTCGGTTCTCATGACATAAGCTTCTGGTCTTCCATTGTTAAGAGCTTTGGCCTTATGCGTAGTAGGCCTCCTCATTTGAAGATTACAAGTGTACACAGTAGTAAAGAAGTCTTAGACAACTTGGGCAAAGAGCTTGCCAGAGAGGCTGACAAATTATACATGCCCTTTGAATTTAACCCAGTCGATGTTAACTTGAGAGACTTAACCAAAGACATGCTTAAAGTACAGCCAGAAGAAACATTGGCTTTCGTTTCCATTCTTAGTCTTCACGTGCTGTTATCTGAGGATGACAGGATAGAAGCTCAATTCAGCTCAAACAAGAGCAATACCATGAAGGACTGTAAGCAACTGGATGAGTTTTTAGCAATGGTGAAGTCAACATCGCCCAAGGTTGTACTGATGGTAGAGCAAGAAGCTGATCACAACCACAATCGTCTAGGGGACAGGTTTGTTGAAAGTTTGCACTATTACAGTGCCTTGTTTGATTCAATAGATGTCACTTTCCAATATTCACACGAGGAAAGATTCGTGTTAGAGGCAATGTTTGGCAGAGAAATTGAGAATATCGTAGCTTGTGAAGGGTTAGAAAGAGTGGAAAGGCATGAGAGGTATATAAAGTGGATGGTGAGGTTTGGTCGAGCTGGGTTGAAGCCAGTACGGATGTGGTTTGATGCTGCAGAGGAAACCAAGCGTGTGATAGAGAATTATAAGGATGGTTATGAAGTTATCAGTGATAAGGGAAGCTTAATGATTTGCTGGCATGGTAGGCCTCTTTATGCTATTTCAGCATGGACTTCTTAA 1254 0.4434 MSSSQKPDITLSLTLSSPPNTQPQSMKPEERGIRLIQLLLACANHASSGNLHRADSCLRQISQLSSMAGDSMQRLAAWFASALAIKLVTRWPGIYKALIHPQLSTQYDLHGLAPAQSTFSQALPYLGFAYSVIARTLHRSMLKEPIIHIVAFGSHDISFWSSIVKSFGLMRSRPPHLKITSVHSSKEVLDNLGKELAREADKLYMPFEFNPVDVNLRDLTKDMLKVQPEETLAFVSILSLHVLLSEDDRIEAQFSSNKSNTMKDCKQLDEFLAMVKSTSPKVVLMVEQEADHNHNRLGDRFVESLHYYSALFDSIDVTFQYSHEERFVLEAMFGREIENIVACEGLERVERHERYIKWMVRFGRAGLKPVRMWFDAAEETKRVIENYKDGYEVISDKGSLMICWHGRPLYAISAWTS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00556 417 ProSiteProfiles GRAS family profile. 26 416 IPR005202 -
Pte6g00556 417 Pfam GRAS domain family 35 416 IPR005202 -
Pte6g00556 417 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 411 IPR005202 -
Pte6g00556 417 MobiDBLite consensus disorder prediction 1 28 - -
Pte6g00556 417 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00556 Pte-Chr6 7154350 7155603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00556 12 415 GRAS Transcription Factor Family AT1G50420 36.062 5.10e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte6g00556 GRAS 1.3e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00556 - - pvy:116109692 518.079