Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00555 ATGGCTTCCATGCCCTTGGGGCCGCACCATCTTCAACCACCACCATCAGCAACAGCTCCAGAACAGATTCAACCACAATCTCTTGATGACAATGACTCTACTAAACTCGCTGCTCGCAGAGGCTGTGATATGGACACCGATAAGGAAATGCCAGCAGCTTTTATTGAGCGTAAGAATGCTGTCACTGGACACATAATCTCAACCACAATTGGTGGTAAAAATGGCGAACCCAAAAGGACTATCAGTTACATGGCCGAGAGGACCGTTGGCGCCGGATCATTTGGGGTAGTCTTCCAGGTTAAAAAAAAATATCAGTTACACAATGTCAATCTTTTCTTGGGGCGTTCATACTTTTTTGCGTTATATGGTGATGTAGAATCTTTTCTTTCCCTTTCTTGCCAGGCAAAATGTATAGAAACGGGTGAAATGGTTGCTATCAAGAAGGTATTGCAGGACAAGCGGTACAAGAATCGTGAGCTGCAGTTAATGCGCTTAATGGATCACCCAAATGTTGTTTCCTTGAAACACTGCTTCTTTTCTACTACAACTAGAGATGAACTGTTTTTAAATCTGGTAATGGAATATATACCAGAGACCTTGCACAGCATTATTAAACATCACAATGATGTGAACCAGAGGATACCTCTCATCTATGTGAAACTTTACATCTATCAGATCTTCAGGGGATTAGCTTACATCCATACCGTTCAAGGGGTTTGCCATAGAGACGTGAAACCTCAAAATCTTTTGGTGGATCCTCTTACTCACCAAGTTAAGCTTTGTGACTTCGGAAGTGCAAAAGTCCTGGTAAGGGGTGAATCAAATATCTCATACATATGTTCTCGTTATTACCGCGCTCCAGAGTTGATATTTGGTGCAACGGAATACACCACTTCTATTGATATTTGGTCAGCTGGTTGTGTCCTTGCTGAGCTTCTTTTGGGCCAGCCATTATTTCCTGGAGAAAATGCCGTTGGCCAACTTGTGGAAATTATCAAGGTGCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAATCCTAATTATACAGATTTTAGATTTCCTCAGGTCAAAGCACATCCATGGCACAAGGTTTTCCACAACCGAATGCCTCCAGAAGCAATCGACCTTACATCCAGGCTACTCCAGTATTCACCAAGTCTTCGTTGCACTGCTCTAGAAGTTTGTGCCCATCCTTTCTTTGATGAGCTACGGGAGCTCAATGCAAGACTACCCAATGGCCGCCCATTCCCACCTCTTTTCAATTTTACACAGGAGTTGACTGGAGCATCCACGGAATTGATCAATCGGCTTATCCCAGAGCACGTTCGTCGTCAAACTGGCCTCGGACTCCCCCATCCAGCTAGTACATATATGTAA 1383 0.4375 MASMPLGPHHLQPPPSATAPEQIQPQSLDDNDSTKLAARRGCDMDTDKEMPAAFIERKNAVTGHIISTTIGGKNGEPKRTISYMAERTVGAGSFGVVFQVKKKYQLHNVNLFLGRSYFFALYGDVESFLSLSCQAKCIETGEMVAIKKVLQDKRYKNRELQLMRLMDHPNVVSLKHCFFSTTTRDELFLNLVMEYIPETLHSIIKHHNDVNQRIPLIYVKLYIYQIFRGLAYIHTVQGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVRGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVGQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQVKAHPWHKVFHNRMPPEAIDLTSRLLQYSPSLRCTALEVCAHPFFDELRELNARLPNGRPFPPLFNFTQELTGASTELINRLIPEHVRRQTGLGLPHPASTYM* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00555 460 SMART serkin_6 83 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00555 460 ProSiteProfiles Protein kinase domain profile. 83 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00555 460 Gene3D Transferase(Phosphotransferase) domain 1 198 445 - -
Pte6g00555 460 SUPERFAMILY Protein kinase-like (PK-like) 82 429 IPR011009 -
Pte6g00555 460 Gene3D Phosphorylase Kinase; domain 1 130 197 - -
Pte6g00555 460 Pfam Protein kinase domain 136 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00555 460 CDD STKc_GSK3 78 405 IPR039192 -
Pte6g00555 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Pte6g00555 460 FunFam Shaggy-related protein kinase kappa 198 445 - -
Pte6g00555 460 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 133 447 - -
Pte6g00555 460 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00555 Pte-Chr6 7115325 7121090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00555 44 440 MAP Kinase Gene Family AT2G43790 32.304 6.99e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pte6g00555 Pkinase 2.9e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00555 K14502 - qsa:O6P43_028926 726.857