LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte6g00552	ATGAGATTGGTATTTCACAAGCCCATTCTCCATATGAGAGAACTGGTTGTACAGATCTTCAGAAAAATGAATCAGATTTTGAGAAGTGGGCCATCACAATCTGCAGAAAACAATGAAATGATGTCAACATGGAATAAGATGCTTGAATCTCCAAGGTTCAATAATATACCTCCATTACCGTACCCTGAGTGGAATATTGACTTCTCTGAATTGACTGTTGGAACACGAATTGGGATAGGTTCCTTCGGTGAAGTGTTCCATGGCGTGTGGAGTGGCACAAATGTAGCTATCAAGGTGTCCTTAGAGCAAGATTTAACTGCTGAGAATATGGAAGACTTTTGTAATGAGATATCAATCCTCAGCCGGCTCAGACATCCCAATGTTATTTTATTTCTTGGTGCCTGTACAAAGCCTCCACGGCTATCAATAGTTACTGAATTTATGGAAAGGGGATCCTTGTATTATTTGATTCATTTGAGCGGGCAGAAAAAGGAGCTCAGTTGGCAAAGAAGACTGAAGATGCTGCTTGATATATGCAGGGGATTGATGTGCTTGCACTATATGAAGATAGTTCATCGTGACCTGAAAACTGCAAACTGCCTCGTGAATAGGCACTGGACTGTCAAGATCTGTGATTTTGGCCTTTCAAGAATAATGACTGAATCTCCCATTAAAAATTCTTCATCAGCTGGAACACCAGAGTGGATGGCTCCTGAGCTTATTCGAAATGAGCCCTTTACTGAAAAATGTGATATTTTTAGCCTGGGGGTGATAATATGGGAGCTCTGCACTTTAAATAAACCATGGGAAGGTGTACCAACAGCAAGTGTGGTTCATGCTGTTGCTGAGGGAACACGCTTGGAGATACCAGAAGGCCCCTTAGGCAGATTGATAACAGGTTCGAGAATATTTATATTTGCTCCTTTCATGTTCTAA	936	0.4124	MRLVFHKPILHMRELVVQIFRKMNQILRSGPSQSAENNEMMSTWNKMLESPRFNNIPPLPYPEWNIDFSELTVGTRIGIGSFGEVFHGVWSGTNVAIKVSLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSIVTEFMERGSLYYLIHLSGQKKELSWQRRLKMLLDICRGLMCLHYMKIVHRDLKTANCLVNRHWTVKICDFGLSRIMTESPIKNSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIIWELCTLNKPWEGVPTASVVHAVAEGTRLEIPEGPLGRLITGSRIFIFAPFMF*	312

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte6g00552	311	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Pte6g00552	311	SUPERFAMILY	Protein kinase-like (PK-like)	42	291	IPR011009	-
	Pte6g00552	311	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	63	298	-	-
	Pte6g00552	311	CDD	STKc_MAP3K-like	77	299	-	-
	Pte6g00552	311	SMART	serkin_6	71	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte6g00552	311	ProSitePatterns	Protein kinases ATP-binding region signature.	77	98	IPR017441	GO:0005524
	Pte6g00552	311	FunFam	Serine/threonine-protein kinase isoform 1	62	149	-	-
	Pte6g00552	311	PRINTS	Tyrosine kinase catalytic domain signature	184	202	IPR001245	GO:0004672\|GO:0006468
	Pte6g00552	311	PRINTS	Tyrosine kinase catalytic domain signature	231	241	IPR001245	GO:0004672\|GO:0006468
	Pte6g00552	311	PRINTS	Tyrosine kinase catalytic domain signature	145	158	IPR001245	GO:0004672\|GO:0006468
	Pte6g00552	311	PRINTS	Tyrosine kinase catalytic domain signature	250	272	IPR001245	GO:0004672\|GO:0006468
	Pte6g00552	311	Gene3D	Phosphorylase Kinase; domain 1	64	149	-	-
	Pte6g00552	311	ProSiteProfiles	Protein kinase domain profile.	71	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte6g00552	311	Pfam	Protein tyrosine and serine/threonine kinase	72	291	IPR001245	GO:0004672\|GO:0006468
	Pte6g00552	311	Gene3D	Transferase(Phosphotransferase) domain 1	150	300	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte6g00552	Pte-Chr6	7073018	7084679	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte6g00552	28	299	MAP Kinase Kinase Kinase	AT2G31010	76.923	7.94e-153	445

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-1	Pte6g00552		PK_Tyr_Ser-Thr	4.4e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte6g00552	-		-	gmx:100810612	479.944