Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00539 ATGGGCATGAAGACCACCGAGGGTGAGATTGTACAAGTTGAAGGCGGTCACATTGTTCGGTCCACAGGTCGGAAAGACAGGCACAGTAAGGTTTATACTGCGAAAGGTCCTCGTGATCGCAGGGTTAGACTTTCAGCTCATACTGCCATTCAATTCTATGATGTCCAAGACCGTTTGGGCTATGACCGACCGAGCAAAGCTGTGGACTGGCTTATGAAGAAGGCAAAGTCCGCCATTGACAATCTCGCAGAGCTACCACCATGGAATCCACTTATTGGAGCAACTGCAATTCCAGATACAGAACCAAATGCTGGTTCTAGTGAAATGCAAATTGCAGGGCAGACAGAGTCTTCAGGGTACAATTTTCAGCAGCACAATCATTCAGCTTTCACGTCACATTCTTTTGACAGTGAAACTGTGGATGATACCATGAAATCCTTCTTCCCCACAAGTGCTACAACTTCCTCCATTCATTTTCAGAGCTACCCAGGTGACATCATTTCTCGAACGACCAACCCTACTGAAGATCTTGGCCTGTCTCTTCACTTTCTACATGGCCAGTCACAAGGTAGCACAAGCCAAGCACCTCGAAATGACCAAACACTTTTTACAGGATCCGCTCCTGTGGGATATGATACCAATTATCACAGACTTGTCACATGGGACAATGAGTCCAATGCTGATACAGGTAGAGGCGGCTTTATCTTCAGTACACCTTCATTACTAGGCCAAGGTTCAGCTTTTTCACAAAGGGGGACCCTTCAGTCCAGTTTTTCACCTTCTTCCTTTCGTCTATGGGGTGATATTCCAATTGCTTCGTCGGATAACAACAAGCCACACTCTGATCAACAGCCTTCCATATTTGGCAGTCAGTTTCTCTCTGATGGCTTACCTGGTTTTTGTTTTCCAACTAGAGTACATGGAGACGAAGAGGACCACGCTGTTTCTTCTGATAGACCATCTCCTCCTGCTGCACCTCCTAATGCTCATCATTGA 996 0.4629 MGMKTTEGEIVQVEGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLMKKAKSAIDNLAELPPWNPLIGATAIPDTEPNAGSSEMQIAGQTESSGYNFQQHNHSAFTSHSFDSETVDDTMKSFFPTSATTSSIHFQSYPGDIISRTTNPTEDLGLSLHFLHGQSQGSTSQAPRNDQTLFTGSAPVGYDTNYHRLVTWDNESNADTGRGGFIFSTPSLLGQGSAFSQRGTLQSSFSPSSFRLWGDIPIASSDNNKPHSDQQPSIFGSQFLSDGLPGFCFPTRVHGDEEDHAVSSDRPSPPAAPPNAHH* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00539 331 Pfam TCP family transcription factor 23 129 IPR017887 -
Pte6g00539 331 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Pte6g00539 331 MobiDBLite consensus disorder prediction 303 331 - -
Pte6g00539 331 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 297 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00539 Pte-Chr6 6798634 6800834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00539 8 312 TCP Transcription Factor Family AT3G15030 42.553 4.66e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pte6g00539 TCP 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00539 - - qsa:O6P43_028879 432.565