Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00538 ATGATCTCAAAAACAATCAACCTTCATCGGAGTCTCCGTCTTGCTTCGAAATCTGACAGGGTTAGGGTTGAATTTACCTGGGAGGTTCTGGTCTCTGGTAAGCAACGCAAAAGGAAGAGTGTTTTTGTTAAGGAGGATCCGGATCCTGTGGAAAAGTCAGTTTCAAAGTTTGAGAAGTGGAAATTGAGTATGGATGACGAGTTATCTAGTTCTGATGGCACTGTTGGTTTTTTAAATTTCAAGTCGAGAAAGAAAATAATAAAGATGCTCATGGTTTCAGAGAAGGAGGTTGATCAGAGTGATAATAGACAACAAGATGAGAATGGTGGCGAGGAAGATGATAAAGGTTCGAAGAATGAAGTCCCATTGATGCCAAGATATTGTGATGATCATGATGATCCTTCTTTCGATTCCTTGTCCCCACAAAAATATGACAGATTCCATAGCCAAGTTATTCTCACAGCAGTAGTCTCCTTAGCCATTGTCATGGGTGGAGTTATTATACTTCATATATACGCAAGGCATGTTCTAAGGAGACAAATTCGTCGTCGAGCTGCCATGCGTCGACTTGGTCTTTCCGTTGCTCAGGCACGTTCTACTTCTCCACAAGTCACAGGCCTTACCCCAGAAATTATAGCGGCTTTGCCTAGGGTTGTGTTCATATCAGAACAACTTTGCGATAAAGATCATGATTCAATTGAATGTACGATTTGTTTGAGCACTTTGGAAGATGGAGAGGATGCAAGATTACTTCCAAATTGTAAGCACATTTTTCATATAGAGTGCATTGATCAATGGTTGGCTGCAAACCCCTCCTGTCCGGTTTGTCGAGGCAAGGTTGATCCATCCGTCGAATCCCAGCTTGCACCGGAACAGCGTGAGGGTCCTGTAAGTCTTGTTGGCGGCAACAATGATGGAGCAACAGGTGCAAGCTTGGATCGTTTGAGTCCTTTTCTGCCAGGTGCTGAAGGCTCATCAAGTGGATCATCACAACATATAGCCAAACTGAATGGCTTGACTTTGCAGTTTGGCAATTTCAGAAGCATGCTTATTAGGGAAAGGGATCAACCTCAAAGTCGAGTTGGGGTTCGAGATTTGGAGATACAATAA 1110 0.4306 MISKTINLHRSLRLASKSDRVRVEFTWEVLVSGKQRKRKSVFVKEDPDPVEKSVSKFEKWKLSMDDELSSSDGTVGFLNFKSRKKIIKMLMVSEKEVDQSDNRQQDENGGEEDDKGSKNEVPLMPRYCDDHDDPSFDSLSPQKYDRFHSQVILTAVVSLAIVMGGVIILHIYARHVLRRQIRRRAAMRRLGLSVAQARSTSPQVTGLTPEIIAALPRVVFISEQLCDKDHDSIECTICLSTLEDGEDARLLPNCKHIFHIECIDQWLAANPSCPVCRGKVDPSVESQLAPEQREGPVSLVGGNNDGATGASLDRLSPFLPGAEGSSSGSSQHIAKLNGLTLQFGNFRSMLIRERDQPQSRVGVRDLEIQ* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00538 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 283 IPR013083 -
Pte6g00538 369 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Pte6g00538 369 SMART ring_2 235 276 IPR001841 -
Pte6g00538 369 Pfam Ring finger domain 234 277 IPR001841 -
Pte6g00538 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 120 288 - -
Pte6g00538 369 MobiDBLite consensus disorder prediction 286 331 - -
Pte6g00538 369 SUPERFAMILY RING/U-box 218 283 - -
Pte6g00538 369 MobiDBLite consensus disorder prediction 96 127 - -
Pte6g00538 369 CDD RING-H2_EL5-like 234 277 - -
Pte6g00538 369 SMART FANCL_C_2 231 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00538 Pte-Chr6 6793661 6795682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00538 140 354 C3H Transcription Factor Family AT2G42360 39.450 1.66e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00538 K19038 - qsa:O6P43_000799 176.407