Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00522 ATGCTAGCGGTGTCTTCTTTGAGGAACCAAGATGAGAGCCAAAGCCAGATGGAGACCTTTTCAATCCGGACAGAAGACTTCATTGAGTTCTCAGATGGAAATATACTCGAAAGTATTAACTTCGATGACATTTTCTTGGATATCAACGATGGAGATGTGTTGCCTAATCTGGAGATGGACCCTAAAATCTTCGCTGATTTTTCCTCTTGTGGTGGTGGTGGTGACCAATCGGAGATGACCTACTTTGCATTAGCGCAAAACTTTGAGGGGAACAATACTGCCACTACTGCTGCTGCTAAAAACAAAGAGGATGAAGACAAAGGTGGTTCACCAGCTTCTGCAAGCTCAGGCTGCTCGATTTCTGTGTCGAATAGAGTAGAGAAGCTTATGATCATGAGCAAGAGAGATGTATCTACCAGGATGAAGACGTCACAAAAAGAATCTGATAGAGGAAAGAAATCATCTGCACAATCAAAGGATTCTCGAGGGAAACGAAAAGTAAAGGTGGATTGGACCCCAGAATTACACAGGCGATTTGTGCAAGCTGTGGAACAGCTGGGTGTGGATAAGGCAGTGCCTTCAAGGATCTTAGAGGTTATGGGTATTGATTGTCTCACTCGCCACAACATAGCAAGCCACCTTCAAAAATATCGATCTCATCGAAAACATATGTTGACACGTGAAGCCGAGGCAGCTAGCTGGAACCAAAGGAGGCAAATGTCTTTCCAAGCCAATGGAGGCAAGAGACCAGCAGCAAACCCTTGGTTAGCACCCACCATCGGTTTCCCTCCAACGAATCCCATGCACCAGTTTAGACCTTTACATGTATGGGGGCATCCAACAAAGGACCAGATGCACATGTGGCCTCCACCTCCACCACAACCAGTATGGGCGTCCCCGGTGCCGCCTAGAACACCACAACTTCCTGACCCTTCATCTAATTGGCACCAGGTTCCAAATCAAACTAAACTAAGCCCGGTACCACTTTGCTTCACTCAGCTTTTGGCTACTACGAGATTTGTGTCTCCACCTGTCCCAGGCATACCTCCTCATCAAGCCATGTACAAAGTAAATCCAGGCATTGGAGTCCCCACCGGGCAAACAGGCCCTCGACCCCTTCTCGACTTTCATCCTTCAAAAGAAAGCGTAGATGCAGCTCTTGGAGATATCTTATCAAAACCAGGGATGCCACTACCTCTTGGCCTCAAGCCTCCTGCAATTGATAGTGTCATGGGTGAATTGCTGCGACAAGGAGTTCCCAATATTCCAAACGCCCGTGTCTGA 1284 0.4727 MLAVSSLRNQDESQSQMETFSIRTEDFIEFSDGNILESINFDDIFLDINDGDVLPNLEMDPKIFADFSSCGGGGDQSEMTYFALAQNFEGNNTATTAAAKNKEDEDKGGSPASASSGCSISVSNRVEKLMIMSKRDVSTRMKTSQKESDRGKKSSAQSKDSRGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEVMGIDCLTRHNIASHLQKYRSHRKHMLTREAEAASWNQRRQMSFQANGGKRPAANPWLAPTIGFPPTNPMHQFRPLHVWGHPTKDQMHMWPPPPPQPVWASPVPPRTPQLPDPSSNWHQVPNQTKLSPVPLCFTQLLATTRFVSPPVPGIPPHQAMYKVNPGIGVPTGQTGPRPLLDFHPSKESVDAALGDILSKPGMPLPLGLKPPAIDSVMGELLRQGVPNIPNARV* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00522 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 222 IPR017930 -
Pte6g00522 427 Gene3D - 163 224 - -
Pte6g00522 427 NCBIfam myb-like DNA-binding domain, SHAQKYF class 166 220 IPR006447 GO:0003677
Pte6g00522 427 FunFam Two-component response regulator 162 225 - -
Pte6g00522 427 MobiDBLite consensus disorder prediction 133 168 - -
Pte6g00522 427 SUPERFAMILY Homeodomain-like 164 223 IPR009057 -
Pte6g00522 427 MobiDBLite consensus disorder prediction 98 118 - -
Pte6g00522 427 Pfam Myb-like DNA-binding domain 169 218 IPR001005 -
Pte6g00522 427 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 425 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00522 Pte-Chr6 6685944 6689211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00522 29 378 G2-like Transcription Factor Family AT5G44190 39.510 1.28e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte6g00522 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00522 - - jre:109001455 470.7