Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00509 ATGAGTAGTGCTTGTGCTGAGCAGCACAAGTTTCATCACTCTCACCAGCTCCTTTCCTCCAAGAAGTACCTTAGGGACATTGACATCCCGCCAAGAATGCTTCTCGGACGCCGAACAGTTCAAGAAAGCTCGGATATGTACACAGATTCACCTCGTTTCTCCTCTTCCGATGAAACCCTTTTGCAGAAGTACCTACCATACAACACTGGTCTTGATTCTGAAGATGATTCTGATCCTTACTCCTCCGATCGTTTCCGCATGTATGAGTTCAAGATACGGAGGTGCACCCGTAGCCGCAGCCATGACTGGACTGACTGTCCGTTTGCTCATCCTGGCGAGAAAGCTCGTCGCCGGGATCCTACTATCTATCGTTATTCATGTACCGTTTGCCCTGAGTATCGCCGTGGTGGGTGTAGCCGTGGGGATAGCTGTGAGTTTGCACATGGGGTGTTTGAGTCATGGCTTCATCCTTCCAGGTACAGAACTGAAGCTTGTAAAGACGGGAAGAACTGCAAGCGAAAGGTATGTTTTTTCGCTCATACTCCCCGCCAACTTAGGATTGTGAATGAGAATTGCCATGATTCTTTAGCTGAGATGTCATGCAAGAAGAATCTCGGCAGTTGCTTGTTCTGTCACTGTGGTGGCCATGGTGCTGCGCCTGCTGCTTCTTCCCCAACTTCTACACTTTTGGGTATATCTCATTTTTCTCCACCACTGTCACCATCACAGTCAATCTCACCACCTCTTTCACCAATCAAAGGAAGGAATGGAATTATATGTGGGTTTTCCCCGATTTCTCGATATAGTGATAGATTTGGAGGATCTGAGTCTTCAAGCTTAATGAGTACTCACCATGGACATGGAATGATGAGCTACAAAGATGTGTTAACTAGGCTCATGAGTTCTTTGGAGGCTGTGAAATTCAGTGAAACTTTGCCTGCTTCACCTATGCCGTCGAACAAAGCACCAACCCTGCCTTGGGTTGATGCTTCATTCAATTGTAATGATCAGCGACAGTTCACTCTTTCACCGTCTACTCCTCCATCAGTTTCCATGTCCGCAAATTCATACAATGGGAATTATTTCAACACCAAAGCCGATGAAAAAAAGGTCAGCGTTGACACTGGTATGTCTTGTCCAACCCCAGACCTCGGTTGGGTTAATGACCTCCTTATGTAG 1179 0.4673 MSSACAEQHKFHHSHQLLSSKKYLRDIDIPPRMLLGRRTVQESSDMYTDSPRFSSSDETLLQKYLPYNTGLDSEDDSDPYSSDRFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPTIYRYSCTVCPEYRRGGCSRGDSCEFAHGVFESWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRIVNENCHDSLAEMSCKKNLGSCLFCHCGGHGAAPAASSPTSTLLGISHFSPPLSPSQSISPPLSPIKGRNGIICGFSPISRYSDRFGGSESSSLMSTHHGHGMMSYKDVLTRLMSSLEAVKFSETLPASPMPSNKAPTLPWVDASFNCNDQRQFTLSPSTPPSVSMSANSYNGNYFNTKADEKKVSVDTGMSCPTPDLGWVNDLLM* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00509 392 PANTHER UNKEMPT FAMILY MEMBER 49 391 IPR045234 -
Pte6g00509 392 SUPERFAMILY CCCH zinc finger 122 152 IPR036855 GO:0046872
Pte6g00509 392 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Pte6g00509 392 FunFam Zinc finger CCCH domain-containing protein 125 187 - -
Pte6g00509 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 149 IPR000571 GO:0046872
Pte6g00509 392 Gene3D - 124 188 - -
Pte6g00509 392 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Pte6g00509 392 SMART c3hfinal6 124 150 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00509 Pte-Chr6 6499021 6500477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00509 76 186 C2H2 Transcription Factor Family AT5G07500 67.568 5.55e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte6g00509 zf-CCCH 9.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00509 K23047 - qsa:O6P43_028831 506.523