Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00507 ATGCCTTCCCAGAAGCGGACTTTTGTCGAGTCTCTTGACGATGAAGATAATACTTCAACACAACTTCATTACCATCGACATGCCAAGCAATCTCGGCGAGATGCACATGTCAGAGATGAGGAACAAGAACAACAAGACCAGCAACAACAAGATGCAGGTGGAGTTGGAGGAGCAGCAGGAGATGCTGCAAGCGGAGGTGGACAGGAGGAACAAGATGAAAAGGATGATGCTGATGGTGGAAGTCAAGGAGATGCAGATAGAGAAGAGGAAGAAGAAAACGATTCTGATGGAGGCCCGTCTTCTGCAACTGAAGATAAACTGGAATTCTTTTATGTGGAACTGTCAGAAATTCGTAAAGACGTACAGTGTCCAATTTGTCTTGGAATTATCAAAAAGACACGAACTGTGATGGAATGCCTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTGGGGAACAATGAGTGCCCTGCTTGCCGCACACATTGTGCAAGCAGGCGTTCTTTAAGGGACGATCCAAACTATGATGCAATTATTGCCACATTGTACCCAGATATTGAGAAGTATGAGGAAGAGGAATTGACATTTCTTGAAGAGGAGAAGGCACGAAATAAACAGATTCAAGCTTCAATTGCCAAAATAGTTCAGCGGCAATCCGAAGCATTGGGGAAAAAACGTCCTTCAGGTAAAGATGCAGTATCAACATTCTCACCTAGATTGCGAAACAATCGCAATACTCATTCAAGGAGGCGAAATCAGGCCATTGATCTTCATGGATCTGAAGACAATGACGAAGAAAATGGTAATAATGGGGAAAAAGATTCATCTTCAGCAGATGAGAGAAGCACAACATTTAGGCAGCGAAGGAGAAAAAGACGAGCTAGAACTCGAAACTCTCATCCTTCTTCCTCCATGGCCCCTGATTGTGGAACTGCTGAAAATGATACAGACATAAGCAAAGAAACCAGAGGAATTTCTCCTGGACTGGTGTCCAATCCTGAAATGCTTGCATGGGGACCTCGTGGTGCACGGAGCCACACAAGACATAGTGGCGGCGGCAGCAATAATAAGAGTTCCCGCAGCACTCGCTTGTCAAAGTTTACTGAGTATCTTCGGGGTTTGGATGAAAATAACGATGAGCTAGATGTGCATCTTATGCTTGTCTCTCTGGAAAAAGAAAGTGCATCAAGTTTGAAGCAGCCTTACCTTTGTTGTTGGCCGACTCTGTCGATCAAACACCTTTGTGAATATGTTGCTTGTCAGTCACCTTTGCAAGCGGAAGAAGTTGAGATATTATCATTAAAAGGATGTTTCTCAGAACAATCAGCCGGTAATGATTTAAACCTAAAACAAAGCTTGGATCTCACAACCTTGGTTGTCGATCCAAGTAATGCAGAAATGAAAGTTCTGGGAGGTCATGAAACTCTGGCTGCTGTTAGAGCCAGCTGCATTTCCATTAGGGAACATATGATTCTAGCATACAGACGAAAGGTGACTGCATAA 1512 0.4398 MPSQKRTFVESLDDEDNTSTQLHYHRHAKQSRRDAHVRDEEQEQQDQQQQDAGGVGGAAGDAASGGGQEEQDEKDDADGGSQGDADREEEEENDSDGGPSSATEDKLEFFYVELSEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDAIIATLYPDIEKYEEEELTFLEEEKARNKQIQASIAKIVQRQSEALGKKRPSGKDAVSTFSPRLRNNRNTHSRRRNQAIDLHGSEDNDEENGNNGEKDSSSADERSTTFRQRRRKRRARTRNSHPSSSMAPDCGTAENDTDISKETRGISPGLVSNPEMLAWGPRGARSHTRHSGGGSNNKSSRSTRLSKFTEYLRGLDENNDELDVHLMLVSLEKESASSLKQPYLCCWPTLSIKHLCEYVACQSPLQAEEVEILSLKGCFSEQSAGNDLNLKQSLDLTTLVVDPSNAEMKVLGGHETLAAVRASCISIREHMILAYRRKVTA* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00507 503 MobiDBLite consensus disorder prediction 351 365 - -
Pte6g00507 503 ProSiteProfiles Zinc finger RING-type profile. 123 163 IPR001841 -
Pte6g00507 503 MobiDBLite consensus disorder prediction 221 365 - -
Pte6g00507 503 MobiDBLite consensus disorder prediction 71 98 - -
Pte6g00507 503 MobiDBLite consensus disorder prediction 8 23 - -
Pte6g00507 503 CDD RING-HC_RING1-like 120 185 - -
Pte6g00507 503 ProSitePatterns Zinc finger RING-type signature. 139 148 IPR017907 -
Pte6g00507 503 Coils Coil 200 220 - -
Pte6g00507 503 MobiDBLite consensus disorder prediction 252 288 - -
Pte6g00507 503 Pfam Zinc finger, C3HC4 type (RING finger) 122 162 - -
Pte6g00507 503 SUPERFAMILY RING/U-box 106 177 - -
Pte6g00507 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 193 IPR013083 -
Pte6g00507 503 SMART ring_2 123 162 IPR001841 -
Pte6g00507 503 PANTHER OS11G0578200 PROTEIN 1 501 IPR044592 -
Pte6g00507 503 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00507 Pte-Chr6 6475581 6480338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00507 121 294 C3H Transcription Factor Family AT2G30580 27.027 6.90e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00507 K10695 - qsa:O6P43_028829 550.051