Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00506 ATGGATGCGGGAAATTTTGAAGGGTTGTTTTATAATAAGCAAAAGATGGGAAGAGAGAAGACTTTGAAGAGGGAGTTCATGTTTGCGTATGATGACGATGACGACAACGACGACAACAATGATTACTCAGATGAAGAGAAGATGAAAGTTGCGACCTTTGGTAGTGCTGGTAGAAAAGGGTCCAATGGAGGTGGTGGCAGCGGGATAAGGTGCTGTCAAGCTGAGAAATGCGCTACTGACTTGACGGATTCAAAGCCGTATTATAGGAAGCACAAAGTGTGTCAACTTCATGCTAAAGCTCAGTTTGTGCTTGTGGCTGGGATATGCAAACGGTTTTGTCAGCAATGCAGCAGATTTCATGAGCTAGCAGAATTTGATGACACCAAAAGGAGTTGTAGGAGGCGTTTGGCTGGACACAACGAACGGCGAAGAAAGACTTCCGGTGAGCCTAATGCAGCAAACGGGTCAAACCGCAAAGCAAGCACGGAGCTAAAAGGAGCTGCCTTCCAGAAAATTGATGATTGA 525 0.4552 MDAGNFEGLFYNKQKMGREKTLKREFMFAYDDDDDNDDNNDYSDEEKMKVATFGSAGRKGSNGGGGSGIRCCQAEKCATDLTDSKPYYRKHKVCQLHAKAQFVLVAGICKRFCQQCSRFHELAEFDDTKRSCRRRLAGHNERRRKTSGEPNAANGSNRKASTELKGAAFQKIDD* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00506 174 Gene3D - 63 133 IPR036893 GO:0003677|GO:0005634
Pte6g00506 174 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Pte6g00506 174 Pfam SBP domain 72 145 IPR004333 GO:0003677
Pte6g00506 174 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 155 IPR044817 GO:0003677
Pte6g00506 174 MobiDBLite consensus disorder prediction 149 163 - -
Pte6g00506 174 MobiDBLite consensus disorder prediction 136 174 - -
Pte6g00506 174 SUPERFAMILY SBT domain 70 148 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00506 Pte-Chr6 6470846 6471837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00506 57 160 SBP-box Gene Family AT1G53160 58.654 6.57e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte6g00506 SBP 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00506 - - qsa:O6P43_028828 175.252