Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00492 ATGGCCTTGGATGAGTACCTGGAGGAGGAAGTAGGCCAGATTGACACTCTTACAGAAGATAAATCTCCTTTGAGAAGATGGAATACAATCTCTGATACTAATGGAAATGAATCTGGTGGTTTTGATTGCAATATTTGCCTGGGTTCTGTTGAAGACCCTGTGGTCACACTCTGTGGTCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTTGACCACTTTCATAGTAGCTCTAGTGAATACCAAGAGCAGCAATCACCACAATGCCCTGTATGTAAAGCAGAGGTTTCTCAGTCTTCTCTAGTGCCCCTTTATGGTCGTGGTCAGATTCCAAATTCTTCTAAAGGCAAAGGTCATTTGATTCCTAGAAGACCTCAAGGTCCTGTTTGTAGATTAAACACACAAAGATCAATTGATCGCAGCACAAGTCATCAACAAGCTCCAGGATTTCATGGTCACTATTATCCTTATGCACCTGAACCATTAAACTCAGTACCAAGCACTTACACATCCCATTTTCTCAGGCCGGGGGTCTCCATAACCAATGTATTTGATCCAATATTCGGAGTCTTTGGGGAGATGTTATACACAAGGATGTTTGGGAACTCGGTGGCAGGTCTATATGCTTATCCGAATAGCTATAATCTTACAGGAAGCGGCAATCCTAGAATTAGAAGACAAGTGATGCAAGCTGATAAATCACTCAGCAGAATATGTTTTTTCCTGTTTTGTTCCATAATGCTGTGTCTTCTTCTGTTCTGA 762 0.4213 MALDEYLEEEVGQIDTLTEDKSPLRRWNTISDTNGNESGGFDCNICLGSVEDPVVTLCGHLYCWPCIYKWLDHFHSSSSEYQEQQSPQCPVCKAEVSQSSLVPLYGRGQIPNSSKGKGHLIPRRPQGPVCRLNTQRSIDRSTSHQQAPGFHGHYYPYAPEPLNSVPSTYTSHFLRPGVSITNVFDPIFGVFGEMLYTRMFGNSVAGLYAYPNSYNLTGSGNPRIRRQVMQADKSLSRICFFLFCSIMLCLLLF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00492 253 SMART ring_2 43 92 IPR001841 -
Pte6g00492 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte6g00492 253 ProSiteProfiles Zinc finger RING-type profile. 43 93 IPR001841 -
Pte6g00492 253 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Pte6g00492 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 106 IPR013083 -
Pte6g00492 253 Pfam RING-type zinc-finger 43 90 IPR027370 -
Pte6g00492 253 SUPERFAMILY RING/U-box 40 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00492 Pte-Chr6 6359830 6363681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00492 31 254 C3H Transcription Factor Family AT4G28270 39.738 2.36e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00492 K10666 - qsa:O6P43_000721 300.056