Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00487 ATGGCTAACAGAACAATGCAGGTGCTTCATCACCGTGCCAGCTCCGTTATCTACTTGAGTTGCTTGTGCATTAGCTTAGCACTAAAGTGTAGGGTCGTTTGGGCTGAAGGGCAGCTTCAGCATCATTCTCCTGACCTGCATTGGTACCCAGGAACCGCTACTTGGTACGGTGACCCTGAAGGCGATGGGAGCGATGGTGGGGCATGTGGGTATGGGTCTTTGGTAGACGTGAGACCTTTGAGAGCTCGAGTGGGAGCAGTAGGGCCAATTCTGTTCAAAAATGGCGAGGGCTGTGGAGCTTGTTACAAGGTGAAGTGCCTGGACGAGAGTATATGCTCAAGGAGAGCTGTGACTGTCATCATTACCGACGAGTGCCCCGGTTGCCCTACTGACACAACGCATTTCGATCTTAGTGGTGCTGCATTTGGGCGCATGGCCATTTCCGGTGAGGGTAGTCCGCTCAGGGATCGAGGGGAGATCCCTGTCATTTACCGCAGGACTCCATGCAAGTATCGTGGAAGAAACGTTGCTTTCCATGTTAATGAAGGTTCAACAGAGTACTGGCTTTCTGTTTTGGTGGAGTTCGAGGATGATGATGGAGATGTTGGGTCAATGCACATTCAAGAGGCAGGGTCTAGTGAGTGGCTGCCAATGAATCATTTATGGGGTGCAAATTGGTGCATCATCGGTGGACCTTTGAGGGGGCCATTTTCAGTCAAGCTAACAACACTGTCTACAGGAAAAACACTGTCTGCCAGAGATGTCATCCCCAACCACTGGACTCCAAAAGCCACATACACATCTCGCCTAAACTTCTTCTCTTAG 825 0.5067 MANRTMQVLHHRASSVIYLSCLCISLALKCRVVWAEGQLQHHSPDLHWYPGTATWYGDPEGDGSDGGACGYGSLVDVRPLRARVGAVGPILFKNGEGCGACYKVKCLDESICSRRAVTVIITDECPGCPTDTTHFDLSGAAFGRMAISGEGSPLRDRGEIPVIYRRTPCKYRGRNVAFHVNEGSTEYWLSVLVEFEDDDGDVGSMHIQEAGSSEWLPMNHLWGANWCIIGGPLRGPFSVKLTTLSTGKTLSARDVIPNHWTPKATYTSRLNFFS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00487 274 SUPERFAMILY Barwin-like endoglucanases 47 173 IPR036908 -
Pte6g00487 274 FunFam Expansin B3 34 170 - -
Pte6g00487 274 Pfam Lytic transglycolase 88 162 IPR009009 -
Pte6g00487 274 Gene3D - 171 273 IPR036749 -
Pte6g00487 274 SMART dpbb_1 84 164 IPR007112 -
Pte6g00487 274 CDD DPBB_EXPB_N 48 169 - -
Pte6g00487 274 PANTHER EXPANSIN-B3 26 272 - -
Pte6g00487 274 FunFam Beta-expansin 3 171 273 - -
Pte6g00487 274 Gene3D - 34 170 IPR036908 -
Pte6g00487 274 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Pte6g00487 274 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Pte6g00487 274 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Pte6g00487 274 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Pte6g00487 274 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Pte6g00487 274 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Pte6g00487 274 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Pte6g00487 274 PRINTS Major pollen allergen Lol pI signature 244 261 IPR005795 GO:0005576|GO:0019953
Pte6g00487 274 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Pte6g00487 274 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576|GO:0019953
Pte6g00487 274 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Pte6g00487 274 PRINTS Major pollen allergen Lol pI signature 124 139 IPR005795 GO:0005576|GO:0019953
Pte6g00487 274 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 174 IPR007112 -
Pte6g00487 274 SUPERFAMILY PHL pollen allergen 174 268 IPR036749 -
Pte6g00487 274 Pfam Expansin C-terminal domain 176 257 IPR007117 -
Pte6g00487 274 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 268 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00487 Pte-Chr6 6335036 6337623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00487 17 209 Expansin Gene Family AT4G28250 68.912 3.10e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00487 K20628 - qsa:O6P43_000705 445.277