Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00482 ATGGCTGAAGCAAAGAATAGTAGTCAATTCAGTAAGGGCGTGGATGAAACTGAAATGAAAACTCGTATGGAAGCTAGTCAAGACTGGGAACTCGACCTAGGGAAAGACCTTGATTTGAGTATTCAGAGCCAGCAGCAATGGAAAACAGTTTTTGATGAAACTTCCTTGTCTCACAGGCCTCTTAAGAAGATGCGTAGCCCTGAACGTCAAGACCCATCTATGTTTTATGCTTCCTCGTCCTCTGATGCTCCTCCAATTACGTCTTCTTTTCCATACCTCTCCCACCTTCCTCTTTCATCTTCATCGTCATCATCTGCTTCAAAAATTTTGTTTCCTTTTGCATTGGATGGGACTCAACGGGATATGCAGTTTCCACCACAATTCCCGAACAATAGTATCCCTTCCTTTTGTCCACCGCCTCAGCAGCCTTCACAGAATCAGCAACAAATGATCTCTTTCAACGCTAACCAACACAACTCCTGCTACCAACCACTCATTGATGCAAACCTTCAACCTTCACAGCAACAACAGCTTCAATATTGGAGTAATGGATTGAATCTAAGCCCAAGAGGACGGATAATGATGATGAATAGGTTAGGACAAGATGGTAGACTGTCGTATCGGCCTCCTCCACAACCTATAAATACTACAAAGCTTTACAGGGGAGTGAGGCAACGCCATTGGGGAAAATGGGTTGCTGAAATTCGCCTCCCTCGCAATAGGACTCGTCTCTGGCTTGGTACATTTGACACTGCAGAAGATGCTGCCATGGCATATGACAGAGAGGCTTTCAAGTTTAGAGGAGCGAATGCGAAGCTCAATTTTCCAGAGCTCTTTTTCAACAAGGATAACGCAGTGACCACAGCTTCAAGTTCAACAATCTCATCGCCCTCAACATCATGCCATTATACAGAACAGACTCACCAAGTTTCAGAAGATCGTCATATGCCTCCTCCTCCGCCGTCACAAGCGGATGAAACCCTCGACACTGATTCAGGAGTTGAGTCTAGTGATACTACGGTAAGCGATGGAATCCAGGCATCTGGAGTTCAGAGTATGTCACAGTCACAAGAATCCATGTGGGGTGAAATGGCAGAAGCTTGGTTCAATGCAATACCAGCTGGATGGGGTCCTGGTAGCCATGTGTGGGATGATTTTGACAGCACCCATAATCTCCTACTGCCATCACAGCTTTCTTTCATGAATCCAACTCAACAGCAAGAATTCAATGAGACACATAAACAAGATGATGACACAATGCGTGTAGGCTCTTCCTCCTCATCTTCTTGTCCTATGAGGCCTTTCTTTTCTACGAATCAAGATTGA 1326 0.4502 MAEAKNSSQFSKGVDETEMKTRMEASQDWELDLGKDLDLSIQSQQQWKTVFDETSLSHRPLKKMRSPERQDPSMFYASSSSDAPPITSSFPYLSHLPLSSSSSSSASKILFPFALDGTQRDMQFPPQFPNNSIPSFCPPPQQPSQNQQQMISFNANQHNSCYQPLIDANLQPSQQQQLQYWSNGLNLSPRGRIMMMNRLGQDGRLSYRPPPQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKFRGANAKLNFPELFFNKDNAVTTASSSTISSPSTSCHYTEQTHQVSEDRHMPPPPPSQADETLDTDSGVESSDTTVSDGIQASGVQSMSQSQESMWGEMAEAWFNAIPAGWGPGSHVWDDFDSTHNLLLPSQLSFMNPTQQQEFNETHKQDDDTMRVGSSSSSSCPMRPFFSTNQD* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00482 441 CDD AP2 218 278 IPR001471 GO:0003700|GO:0006355
Pte6g00482 441 PRINTS Ethylene responsive element binding protein signature 220 231 IPR001471 GO:0003700|GO:0006355
Pte6g00482 441 PRINTS Ethylene responsive element binding protein signature 242 258 IPR001471 GO:0003700|GO:0006355
Pte6g00482 441 MobiDBLite consensus disorder prediction 1 22 - -
Pte6g00482 441 MobiDBLite consensus disorder prediction 289 359 - -
Pte6g00482 441 MobiDBLite consensus disorder prediction 421 441 - -
Pte6g00482 441 Pfam AP2 domain 220 268 IPR001471 GO:0003700|GO:0006355
Pte6g00482 441 FunFam Ethylene-responsive transcription factor 2 218 277 - -
Pte6g00482 441 MobiDBLite consensus disorder prediction 325 359 - -
Pte6g00482 441 ProSiteProfiles AP2/ERF domain profile. 219 276 IPR001471 GO:0003700|GO:0006355
Pte6g00482 441 SUPERFAMILY DNA-binding domain 219 277 IPR016177 GO:0003677
Pte6g00482 441 MobiDBLite consensus disorder prediction 58 81 - -
Pte6g00482 441 SMART rav1_2 219 282 IPR001471 GO:0003700|GO:0006355
Pte6g00482 441 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 386 - -
Pte6g00482 441 Gene3D AP2/ERF domain 219 277 IPR036955 GO:0003700|GO:0006355
Pte6g00482 441 MobiDBLite consensus disorder prediction 289 306 - -
Pte6g00482 441 MobiDBLite consensus disorder prediction 405 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00482 Pte-Chr6 6320704 6322029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00482 1 386 AP2-EREBP Transcription Factor Family AT2G20880 41.388 1.35e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte6g00482 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00482 - - qsa:O6P43_028790 471.085