Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00453 ATGGAGAAAACACCAATTGCAAGTCAATGTCCTCCTGAGTCTGCTGCCTCTGAAGGCAACTCATCCAAAGGTTTAGGCACTAGTAGTGTTGATGAAAAGACAGTTAACTTGATGAGCACTTCAACTGATCATCCTGATACTCGTCTCTCCCTTGGTCTTAACAAGGCTGCTGATCATGATGATGAATCGAACCGTGGATCACAGGTTGAACTCAATGTCCTCAACCCCACACATGTCGGTTCGCCATCTAGGGCTAATGAAAAAGGTCCAGACGACAAGGATGGCTCTCCTGCGGCTAATAAGACTTACTTATGCGCCTACTGCGAGAGAATGTTCTCTACTTCGCAGGCACTAGGAGGCCATCAAAACGCTCACAAGCTAGAGCGTGAGCGTGCAAAAAGGGGACAGTTAGTGAAGGATGTTAGTCCTTCTGGGCATCCATACTATCCTTACTACACTTATTCAAGTTTCTCTACACACTCTTATCATGGTTCATCGATTAACATGTCGTGTCTTGGGGTTAGGCTTGACTCCATGATTCATAAACCTTCTTTTGGACGGAGCCCACATGCTTATAGACTTAACCATGGAGGGTGGTCTTCAAGATCAAACATTCTGAACTCACCACCACCCATGTCACTTGACTGGCTAAGGAACATGGAGGGTGCTTTCCAAGCAAACAGAAATGGAATTGGAACCCTAGCAGGGAACAATCCTACTTCCGCTGCAGCTACAACCACAACTGAGGAAAGTGGCCTTCTCATTCTCTTGGATGGCGCAAACTCAACCACTTCGAATACATCAAGTTTATCCATGAACAATTCAATTGCAATAACAGAGGGTGATCATCAACTCAAGAGTCATGAAGAACCTCCAAAGATCGACAACATTGAATCTGCTGAACTTGATTTGACGCTTAAGCTCTAG 927 0.452 MEKTPIASQCPPESAASEGNSSKGLGTSSVDEKTVNLMSTSTDHPDTRLSLGLNKAADHDDESNRGSQVELNVLNPTHVGSPSRANEKGPDDKDGSPAANKTYLCAYCERMFSTSQALGGHQNAHKLERERAKRGQLVKDVSPSGHPYYPYYTYSSFSTHSYHGSSINMSCLGVRLDSMIHKPSFGRSPHAYRLNHGGWSSRSNILNSPPPMSLDWLRNMEGAFQANRNGIGTLAGNNPTSAAATTTTEESGLLILLDGANSTTSNTSSLSMNNSIAITEGDHQLKSHEEPPKIDNIESAELDLTLKL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00453 308 Gene3D Classic Zinc Finger 92 146 - -
Pte6g00453 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Pte6g00453 308 MobiDBLite consensus disorder prediction 10 48 - -
Pte6g00453 308 MobiDBLite consensus disorder prediction 67 82 - -
Pte6g00453 308 MobiDBLite consensus disorder prediction 1 97 - -
Pte6g00453 308 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Pte6g00453 308 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 308 IPR044246 GO:0009788
Pte6g00453 308 SUPERFAMILY beta-beta-alpha zinc fingers 100 129 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00453 Pte-Chr6 5306377 5307303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00453 70 184 C2H2 Transcription Factor Family AT5G10970 40.870 7.71e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte6g00453 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00453 - - qsu:112001758 126.716