Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00447 ATGGGTCATTCCACGAATCAGAATGAAGGAGCCGCCTCCAAGGGTCAGGATGGATTACAATTGAATGATGATAGTCAAGGAGATGGTGCTAGTGGAGTAATTCTGAAGAAGGGGCCGTGGACTTCTGCAGAAGACGCTATTTTGATTGATTACGTCAAGAAGCATGGGGAAGGGAACTGGAATGCTGTTCAAAAGCACTCGGGTTTGTCTCGTTGCGGAAAAAGCTGCCGGCTGCGATGGGCAAATCATCTAAGGCCTAATTTAAAGAAAGGAGCTTTTACAGCTGAAGAGGAACGATTAATTGCCGAGCTACAAGCCAAGATGGGGAACAAATGGGCTCGTATGGCTGCTCACTTGCCTGGTCGTACTGACAATGAGATAAAGAATTATTGGAATACTCGGATTAAGAGGCGCCAAAGAGCTGGTTTACCAATATACCCTCCTCAACTGTATTTGCAAGCATTGCAGGAGCAGCATGGCCAACTTAATGGTGGAATTGATGGTGCAAATAGAGGACTTACAGATCTGGGGAAGAGCAGTTATGAGACACCTGATGTCATGTTTAATGGTCTAAAAACCAACCAGGGTATCGTCCATTATATGCCGGATCGATCTGATATTTCCACAAATCACATCTTACCGGAAGGTTATGATCCTTCTCAGTATTGTAATATCATGCCATCAGTGATGCGTCGCCAGAAACCACTTTGTGAATCAATAGGCCCATTCATTGGGTCTATTAATAGTATCAAGAATGATTTCTTTCCTTTTGACCAATTTCAGAATGATACTAGTCATAAGTTTGCTCAATCACATGGAATATCTTGTGTTGACCCTGTTCCTACTTCAGACAATTCAATGTCTTTTAGCCATTCACACTCCAATGGCAATTCTTCTGCTTCACAGCCTACATCTGAGGCTGTGAAGTTAGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAACTAGCTGGGGAACTTCTTCAAACCCGCTTCCTCTATTTGAGTCAGTTGATGCTTTCATTCAGTCTCCTCCTGCTAGTGCTCAGGAGTCAGATAATTCTTCACCACGTAATAGTGGACTGCTAGATGCTTTACTTTACCAGGCAAAGACTTTAAGTAATGCAAAGAATCATTCTTCTGACAAGGTTTCTAACTCTTCTAGTACAACTCCATATGACAATGCGGAGACTTCAACATTGAACATCTGTCAAACAGAGTGGGAAGACTTTGCTGATCCTATATCTCCTTTTGGGCACTCTGCAACCTCATTTTTTTATGAATGTGCTCCTATTAATGCCAAAAGAGGTTCGATGGATGAAGAGAATCTGAATGCAGGAAACGTGAAGTCAGAACCAATTGATCAGCCTGGTATCTCAAATTGTGAAAGTTGTACCCCATCAACGGTATACACTATGAGGCCAGATGCTTTGCTTGCCTCAGATTGGCTCGAACTAAATTCTGGGCATGCTAAGAACCATGGCGTGGTGCCTGATACATTTACAACCCTTGGTGATGATTTGGCCACTGAATATGATCACATGACAACTGGAACTACTACATCAAGTTATGGGTGGGGCATTGGTTCTTGCATATGGAATAACATGCCTGCTGTCTGTCAAATGTCTGATTTTCCTTGA 1641 0.4278 MGHSTNQNEGAASKGQDGLQLNDDSQGDGASGVILKKGPWTSAEDAILIDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELQAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPIYPPQLYLQALQEQHGQLNGGIDGANRGLTDLGKSSYETPDVMFNGLKTNQGIVHYMPDRSDISTNHILPEGYDPSQYCNIMPSVMRRQKPLCESIGPFIGSINSIKNDFFPFDQFQNDTSHKFAQSHGISCVDPVPTSDNSMSFSHSHSNGNSSASQPTSEAVKLELPSLQYPETDLTSWGTSSNPLPLFESVDAFIQSPPASAQESDNSSPRNSGLLDALLYQAKTLSNAKNHSSDKVSNSSSTTPYDNAETSTLNICQTEWEDFADPISPFGHSATSFFYECAPINAKRGSMDEENLNAGNVKSEPIDQPGISNCESCTPSTVYTMRPDALLASDWLELNSGHAKNHGVVPDTFTTLGDDLATEYDHMTTGTTTSSYGWGIGSCIWNNMPAVCQMSDFP* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00447 546 Gene3D - 92 138 - -
Pte6g00447 546 MobiDBLite consensus disorder prediction 285 308 - -
Pte6g00447 546 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Pte6g00447 546 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Pte6g00447 546 MobiDBLite consensus disorder prediction 1 27 - -
Pte6g00447 546 Gene3D - 36 89 - -
Pte6g00447 546 CDD SANT 39 84 IPR001005 -
Pte6g00447 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Pte6g00447 546 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Pte6g00447 546 CDD SANT 92 133 IPR001005 -
Pte6g00447 546 FunFam MYB-related transcription factor 36 89 - -
Pte6g00447 546 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 17 495 - -
Pte6g00447 546 MobiDBLite consensus disorder prediction 377 396 - -
Pte6g00447 546 ProSiteProfiles Myb-like domain profile. 35 84 IPR001005 -
Pte6g00447 546 FunFam Transcription factor GAMYB 92 138 - -
Pte6g00447 546 SMART sant 89 137 IPR001005 -
Pte6g00447 546 SMART sant 36 86 IPR001005 -
Pte6g00447 546 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Pte6g00447 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Pte6g00447 546 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00447 Pte-Chr6 5260746 5264063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00447 23 547 MYB Transcription Factor Family AT5G06100 42.329 8.67e-119 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g00447 Myb_DNA-binding 3.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00447 K09422 - qsa:O6P43_029762 657.907