Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00442 ATGACTGCAGCAGGGCCCCTGCAATCTTACAAATTAGAAGCCAAGGCAATTACCAGGTTACAATCTTTGCCAAGTGGGAGCATGGAAAGGCTCTGTGATACGATGGTGCAAGAGGCTTCACGTTTTTTATTCATCAAGAATAAAGTGCGCATGATAGTTGATTGCGGTGCAAAGCATGTTAAAGTGCTGCAAGATGAAAAACTCCCTTTTGATCAGACCTTGTGTGGATCAACCATGAGGGCACCCCCCAGCTGCCACTCACAGTACATGAAGAACATGAACTCTGTAGCCTCCCTGGTTATGGCAGTTGTGGTTAATGAAGGAGAGGAAAGGAGACAGACGGTTCAGTAA 351 0.4615 MTAAGPLQSYKLEAKAITRLQSLPSGSMERLCDTMVQEASRFLFIKNKVRMIVDCGAKHVKVLQDEKLPFDQTLCGSTMRAPPSCHSQYMKNMNSVASLVMAVVVNEGEERRQTVQ* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00442 116 Gene3D - 39 106 IPR029016 -
Pte6g00442 116 Gene3D PAS domain 55 83 - -
Pte6g00442 116 Pfam GAF domain 36 108 IPR003018 GO:0005515
Pte6g00442 116 SUPERFAMILY GAF domain-like 22 107 - -
Pte6g00442 116 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 34 107 IPR016132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00442 Pte-Chr6 5167757 5168247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00442 1 107 Histidine Kinase Gene Family AT1G09570 59.740 3.18e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00442 K12120 - pop:7482219 174.866