Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00439 ATGTCTTCTTTAAGATCCTACAGCCAAGTCAATGAGATTGAACAAGCTAGGCTTCAAGCTCGCAACAGAACCAGAAAGAGAATCACTGTCATATGCTTGTCTTCCATTGTCCTAATCGCGGTTGTCGTTGCTGCTGTCCTAGGAACATCTGCTCGCAACTCTAGAAGCGATTCAAACAATGGTGAAGCTGATCAACAGTCTCTCTCGACTTCAGTGAAAGCTGTATGCGACGTTACATTATACAAAGATGTCTGTTTTAGCAGCCTTAGCACAATGGTGAACTCTAGCGGGCAGCATCAGCCTGAGGACCTCTTCAGATTTTCAGTTATGTTGGCTTTAGGTGAAGCATCCAAAGCTGCTTTGCAGTTGACACAACAAGAAGCTTTCAGAAGTGCAACAAGTCAGGATAATCTGACAGCTGCAGCGTTGGGAAATTGTGTTGAACTTCTGGGACTTACTGTTGATCATCTGAACAACTCTTTGGTCGTCTCTGGACAACAATCTTCATTGCTTTCTGCTTTTCAAGACATCCAAACATGGCTAAGCGCTGCAGGTACTTACCAGCAGACTTGCATTGATGGAGTAGAAGAGGCAAAGCCAGAATGGGTGGCAAGTATAGCTGACTACCTTAAAAATTCAACTCAACTAACTAGCAATAGCCTTGCAATCATTACTTGGATCACAAGGGTTGTGGACTCCGTGAGCATGAGGCGCTTACTGAGTTTCCCACATGATATTAGAGAGACAGCAGAATGGCTAAGTTCGAAAGATAGGAAGCTCCTGCAAGCTAGAGACTTGCGGACGCGCGCTGATATTGTTGTATCACAAGATGGGTCTGGAAAATTCAAGAGGATCAATGATGCCCTAAAAGCAGTTCCAGAAAAAAGCAAGAAGAGGACAGTGATCTATGTCAAGAAAGGAGTCTACTATGAAAATGTTAGGGTTGAAAAATCCAAATGGAATGTTATGATGGTTGGTGATGGAATGACTTCTACAATTGTATCTGGTAGCCTTAACGTTGTCGATGGCACTCCCACATTTTCAACAGCAACCTTTGCTGTTTTTGGCAAGGGCTTCATTGGCAGAGACATGGGGTTTCGCAACACGGCTGGCCCTCAAAAGCATCAAGCTGTGGCACTCATGGCAAGTGCGGATGAGGTTGTCTTCCATAGGTGTCACGTTGATGCATTCCAAGACTCCCTTTATGCACATTCCAACAGACAGTTCTACAGTGAATGCAACATTTATGGTACAGTTGATTTCATATTTGGCAACTCCGCAGTTGTGATCCAAAACTGCAAAATTCTGCCGAAGAAACCAATGCCTGGACAGCAGAACACAATCACAGCTCAAGGTAAAGTTGACCCAAACCAAAACACAGGAATCTCAATTCAGAACTGCAACATTGCTCCTTTTGAGAATTTGAGCTCAGTACAAACGTATCTAGGAAGGCCTTGGAAGAATTACTCTACAACTGTTTACATGCAGTCAACAATGGCAGACTTCATTAACCCAAATGGGTGGTTACCATGGGTAGGAAATTCTGCACCTGATACCATATTCTATGCTGAGTATCAGAACGTTGGACCTGGGGCTTCAACAAAGAATAGGGTCAAGTGGAAGGGTTTGAGATCTATCAACGGTAAGGAAGCAAGTAAATTCACAGTGAAGGCTTTTCTCAAAGGAGATAAGTGGGTCTCATCTTCTGGATCAACCTTCAAATCTGGGCTTTAA 1734 0.4366 MSSLRSYSQVNEIEQARLQARNRTRKRITVICLSSIVLIAVVVAAVLGTSARNSRSDSNNGEADQQSLSTSVKAVCDVTLYKDVCFSSLSTMVNSSGQHQPEDLFRFSVMLALGEASKAALQLTQQEAFRSATSQDNLTAAALGNCVELLGLTVDHLNNSLVVSGQQSSLLSAFQDIQTWLSAAGTYQQTCIDGVEEAKPEWVASIADYLKNSTQLTSNSLAIITWITRVVDSVSMRRLLSFPHDIRETAEWLSSKDRKLLQARDLRTRADIVVSQDGSGKFKRINDALKAVPEKSKKRTVIYVKKGVYYENVRVEKSKWNVMMVGDGMTSTIVSGSLNVVDGTPTFSTATFAVFGKGFIGRDMGFRNTAGPQKHQAVALMASADEVVFHRCHVDAFQDSLYAHSNRQFYSECNIYGTVDFIFGNSAVVIQNCKILPKKPMPGQQNTITAQGKVDPNQNTGISIQNCNIAPFENLSSVQTYLGRPWKNYSTTVYMQSTMADFINPNGWLPWVGNSAPDTIFYAEYQNVGPGASTKNRVKWKGLRSINGKEASKFTVKAFLKGDKWVSSSGSTFKSGL* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00439 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 228 IPR035513 -
Pte6g00439 577 FunFam Pectinesterase 265 577 - -
Pte6g00439 577 Pfam Pectinesterase 271 563 IPR000070 GO:0030599|GO:0042545
Pte6g00439 577 CDD PMEI-like_3 74 229 - -
Pte6g00439 577 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Pte6g00439 577 Pfam Plant invertase/pectin methylesterase inhibitor 71 223 IPR006501 GO:0004857
Pte6g00439 577 NCBIfam pectinesterase inhibitor domain 42 227 IPR006501 GO:0004857
Pte6g00439 577 Gene3D - 266 577 IPR012334 -
Pte6g00439 577 PANTHER PECTINESTERASE 38 567 - -
Pte6g00439 577 SMART PMEI_2 67 223 IPR006501 GO:0004857
Pte6g00439 577 FunFam Pectinesterase 68 228 - -
Pte6g00439 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 228 IPR035513 -
Pte6g00439 577 SUPERFAMILY Pectin lyase-like 268 574 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00439 Pte-Chr6 5152843 5154964 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00439 4 578 Carbohydrate Esterase AT5G04960 56.701 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00439 - - qsa:O6P43_029775 793.112