Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00430 ATGGGACAGGAAGCAAGAAGACTTTCTGATGAATACGAGGTCTCAGAAATCTTAGGCAGAGGAGGATTTTCTGTTGTCAGAAAAGGTACAAGGAAGTCAAGCAATGAAAAAACTCAGGTAGCCATCAAGACATTGAAAAGACTTGGTCCTTCAATCCCATCTGGAATACCAAGAAGTCATGGTGGTGGAAAAATCGCAGCCCCGATGGGGTTTCCAACATGGAGACAGGTTTCAGTATCAGATGCCTTACTCACCAACGAGATTTTGGTCATGAGAAGAGTTGTTGAGAATGTTTCACCCCACAAAAATGTCATTGACCTTTACGATGTCTATGAGGATCCAAATGGGGTTCATCTTGTTCTAGAGCTGTGCTCGGGTGGCGAACTGTTCGATCGGATTGTAGCTCAGGAAAGATACTCAGAGGCAGGAGCCGCAGCTGTGGTTCGTCAGATTGCAGAAGGACTGAAAGCTCTTCATGAGGCGAATATTGTTCATAGGGACTTGAAGCCTGAGAACTGTCTCTTTCTGAACAAGAGTGAAGATTCTCCTTTGAAGATCATGGACTTTGGATTGAGTTCTGTGGAAGAGTTCACGGACCCTGTTGTTGGTTTGTTTGGTTCAATTGACTATGTCTCACCAGAGGCTCTTTCTCAAGGGAAAATATCTACCAAGAGTGACATGTGGTCTGTAGGAGTTATCTTGTATATCTTGCTCTCAGGGTACCCTCCTTTCTATGCACCAAATAATCGGCAGAAGCAAGAAATGATCTTGGCGGGGAATTTCAATTTTGATGAGAAGACATGGAAGGGCATTTCCTCATCAGCGAAGTCTATAATTAAAAGTCTATTGACTGTTGATCCTCAGTGGAGACCTAGTGCTCAACAGCTTCTGGACAATCCATGGGTTGCAGGTGCAATAGCAAAAGAGGAACAAATAGATCCTGAGATTGTCTCGCGTCTGCAGACCTTCAACGCCAGACGCAAACTTCGTGCTGCTGCAATAGCTAGTGTTTGGAGCGCCACTGTGTTTTTGAGGACGAAGAAGTTGAAATCTTTGCTAGGTTCCCATGATCTCACAAAAGACGAAATTGAACAATTGAGGATACATTTCCAGAAGATATGTGCTAAAGGAGACAATGCCACCCTATCTGAATTTGTGGAGGTGCTTGAAGCCATGAATATGTCATCACTCATCCCACTAGCACCACGCATATTTGACCTATTCGATAATAATCGCGATGGAACGGTTGACATGAGAGAGATATTGTGTGGATTCTCCAGCCTCAGGAATTCACAGGGTGATGATGCTCTTCGTTTATGCTTCCAGATGTACGACACAGACCGGTCCGGGTGCATCACGAAGGAAGAAGTAGCATCCATGTTAAGAGCTTTGCCAGATGACTGTCTTCCTGCTGATATAACTGAGCCAGGGAAATTGGATGAGATATTTGACCGCATGGATGCCAACAGTGATGGAAAAGTCACCTTTGAGGAATTCAAAGCTGCTATGCAGAGAGACAGCTCACTCCAAGATGCAGTCCTTTCCTCTCTTCGTCCCACATAA 1563 0.4466 MGQEARRLSDEYEVSEILGRGGFSVVRKGTRKSSNEKTQVAIKTLKRLGPSIPSGIPRSHGGGKIAAPMGFPTWRQVSVSDALLTNEILVMRRVVENVSPHKNVIDLYDVYEDPNGVHLVLELCSGGELFDRIVAQERYSEAGAAAVVRQIAEGLKALHEANIVHRDLKPENCLFLNKSEDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKISTKSDMWSVGVILYILLSGYPPFYAPNNRQKQEMILAGNFNFDEKTWKGISSSAKSIIKSLLTVDPQWRPSAQQLLDNPWVAGAIAKEEQIDPEIVSRLQTFNARRKLRAAAIASVWSATVFLRTKKLKSLLGSHDLTKDEIEQLRIHFQKICAKGDNATLSEFVEVLEAMNMSSLIPLAPRIFDLFDNNRDGTVDMREILCGFSSLRNSQGDDALRLCFQMYDTDRSGCITKEEVASMLRALPDDCLPADITEPGKLDEIFDRMDANSDGKVTFEEFKAAMQRDSSLQDAVLSSLRPT* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00430 520 Pfam EF-hand domain pair 435 504 IPR002048 GO:0005509
Pte6g00430 520 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Pte6g00430 520 SMART efh_1 478 506 IPR002048 GO:0005509
Pte6g00430 520 SMART efh_1 400 428 IPR002048 GO:0005509
Pte6g00430 520 SMART efh_1 436 464 IPR002048 GO:0005509
Pte6g00430 520 CDD STKc_CAMK 12 301 - -
Pte6g00430 520 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Pte6g00430 520 Pfam EF hand 405 420 IPR002048 GO:0005509
Pte6g00430 520 Gene3D Phosphorylase Kinase; domain 1 73 128 - -
Pte6g00430 520 Gene3D Phosphorylase Kinase; domain 1 7 49 - -
Pte6g00430 520 CDD EFh 403 462 IPR002048 GO:0005509
Pte6g00430 520 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 129 319 - -
Pte6g00430 520 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Pte6g00430 520 Gene3D - 321 514 - -
Pte6g00430 520 ProSitePatterns Protein kinases ATP-binding region signature. 18 43 IPR017441 GO:0005524
Pte6g00430 520 SMART serkin_6 12 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00430 520 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Pte6g00430 520 CDD EFh 437 504 IPR002048 GO:0005509
Pte6g00430 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Pte6g00430 520 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Pte6g00430 520 SUPERFAMILY Protein kinase-like (PK-like) 6 322 IPR011009 -
Pte6g00430 520 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Pte6g00430 520 Pfam Protein kinase domain 84 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00430 520 ProSiteProfiles Protein kinase domain profile. 12 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g00430 520 Gene3D Transferase(Phosphotransferase) domain 1 129 320 - -
Pte6g00430 520 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 345 514 - -
Pte6g00430 520 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 125 - -
Pte6g00430 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 483 - -
Pte6g00430 520 SUPERFAMILY EF-hand 347 511 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00430 Pte-Chr6 5083690 5086676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00430 3 505 EF-hand Containing Proteins AT4G23650 32.742 3.14e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Pte6g00430 Pkinase 1.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00430 K13412 - pop:18102794 862.448