Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00426 ATGAGAGAGACACAGGTTAAGAGGTCTCCTACTACTTCTTCTTGTTCCTCATCATGTTCCTATGTTGGGTTTGATAATGCTCCAGAAAAAACAGTGAAGCCCAGGGCGAAACGTTCAAGGACTAATGAAACTCCTCAGACATGTGAGCTGAACAATGGCAATGGCACCATGAGCTCTGCCACTAACAGAAGAAGCTCAATATACAGAGGTGTCACCAGACATAGATGGACTGGGAGGTTTGAAGCTCACCTCTGGGATAAGAGTTGTTGGAACAATATTCAAAACAAAAAAGGACGACAAGTGTATTTGGGGGCATATGACAGTGAAGAGGCTGCCGCTCGTACCTACGACCTTGCTGCCCTCAAATATTGGGGCCCCGGCACCACTTTGAATTTTCCGATAGAAGGATATACAAAAGAGGTTGAGGAAATGGATAAGCTAACTAAGGAAGAATACTTGGCCACATTAAGAAGGCAAAGTAGTGGATTTTCTAGAGGTGTTTCTAAGTATCGTGGGGTTGCAAGGCATCATCATAATGGGAGATGGGAAGCAAGGATCGGAAGAGTCTTTGGAAACAAGTACCTCTACTTGGGAACTTATAATACTCAAGAGGAGGCAGCAGCAGCATATGATTTGGCAGCCATAGAATACAGAGGAGCAAATGCAGTGACCAATTTTGACATTAGTAACTACATTGACAGATTAAAGAATAAGATTCCTTCTGCTGACAAATCCCAAGACACAGAGATGGAGACAGAGACAGAGACACAAACAGAGTCAGCCCCCATTTCCTCCACTGAATCAGAGGAAACAGAGGTAGATCAACTAACGAAGCAACCGACTATAGAACAAGAGCAGCAGCAGCATCCACAACCACATCAGGAAATACTAAAAGAACCAAAGCGTGAGAGGGAATCTCCAGAACTTGAATATAACCAGATGCCACCTTGCATGGAAGAGTCGTCCATGGCGGTCATGGAACCTGTGGTGGACAATGACCACTCGTGGAGTTTCATTGATACAGGGTTTACTCAATTTCAAGTTCCACTTGACCTGCCTCTGGATAAAACAGGGGAGCTGCTGGATGTGTTTGATAACAGAGGATTTGAAGAAAACATTGATTTCCTATTTGGATTGGATTCCAACGAGAATAATTTTGACTTAAACAAGATTTTGGAAGGTGAGCAGGACACGGGTGATGCCTCAAACAGTGGAGCAAACAATGAGCAGGAGGAGAGATCATTGTCTTTGTCGTCGCCCTCTTCAATTCCTTCTTCTTCTTCAACTGGTTCCCCTTCTTTTTCAACAACTCCAGTCTCTCCTGTAATTATTCTTTTCGAAAAAAGGTTTGAACTTTGA 1359 0.4356 MRETQVKRSPTTSSCSSSCSYVGFDNAPEKTVKPRAKRSRTNETPQTCELNNGNGTMSSATNRRSSIYRGVTRHRWTGRFEAHLWDKSCWNNIQNKKGRQVYLGAYDSEEAAARTYDLAALKYWGPGTTLNFPIEGYTKEVEEMDKLTKEEYLATLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYNTQEEAAAAYDLAAIEYRGANAVTNFDISNYIDRLKNKIPSADKSQDTEMETETETQTESAPISSTESEETEVDQLTKQPTIEQEQQQHPQPHQEILKEPKRERESPELEYNQMPPCMEESSMAVMEPVVDNDHSWSFIDTGFTQFQVPLDLPLDKTGELLDVFDNRGFEENIDFLFGLDSNENNFDLNKILEGEQDTGDASNSGANNEQEERSLSLSSPSSIPSSSSTGSPSFSTTPVSPVIILFEKRFEL* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00426 452 CDD AP2 168 229 IPR001471 GO:0003700|GO:0006355
Pte6g00426 452 CDD AP2 66 134 IPR001471 GO:0003700|GO:0006355
Pte6g00426 452 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 299 - -
Pte6g00426 452 MobiDBLite consensus disorder prediction 1 61 - -
Pte6g00426 452 MobiDBLite consensus disorder prediction 7 24 - -
Pte6g00426 452 MobiDBLite consensus disorder prediction 255 270 - -
Pte6g00426 452 Pfam AP2 domain 67 125 IPR001471 GO:0003700|GO:0006355
Pte6g00426 452 Pfam AP2 domain 168 219 IPR001471 GO:0003700|GO:0006355
Pte6g00426 452 FunFam AP2-like ethylene-responsive transcription factor 66 135 - -
Pte6g00426 452 MobiDBLite consensus disorder prediction 395 438 - -
Pte6g00426 452 MobiDBLite consensus disorder prediction 277 291 - -
Pte6g00426 452 ProSiteProfiles AP2/ERF domain profile. 169 227 IPR001471 GO:0003700|GO:0006355
Pte6g00426 452 ProSiteProfiles AP2/ERF domain profile. 67 133 IPR001471 GO:0003700|GO:0006355
Pte6g00426 452 SUPERFAMILY DNA-binding domain 168 229 IPR016177 GO:0003677
Pte6g00426 452 PRINTS Ethylene responsive element binding protein signature 209 229 IPR001471 GO:0003700|GO:0006355
Pte6g00426 452 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Pte6g00426 452 MobiDBLite consensus disorder prediction 242 309 - -
Pte6g00426 452 SMART rav1_2 169 233 IPR001471 GO:0003700|GO:0006355
Pte6g00426 452 SMART rav1_2 67 139 IPR001471 GO:0003700|GO:0006355
Pte6g00426 452 MobiDBLite consensus disorder prediction 43 61 - -
Pte6g00426 452 FunFam AP2-like ethylene-responsive transcription factor 168 229 - -
Pte6g00426 452 Gene3D AP2/ERF domain 67 135 IPR036955 GO:0003700|GO:0006355
Pte6g00426 452 Gene3D AP2/ERF domain 168 229 IPR036955 GO:0003700|GO:0006355
Pte6g00426 452 MobiDBLite consensus disorder prediction 292 309 - -
Pte6g00426 452 SUPERFAMILY DNA-binding domain 66 134 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00426 Pte-Chr6 5029895 5033588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00426 136 236 AP2-EREBP Transcription Factor Family AT5G57390 36.842 5.78e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pte6g00426 AP2 2.7e-13 CL0081