Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00419 ATGAACCAGCTGGATGAAAAAGTCACAATGGACCTGGCAACCCCAGCTGAGCAGCATCTTTGCTATGTCCGATGCAACTTCTGCAACACTGTGCTTGCGGTCGGAATTCCAAGCAAGCGCGTGCTTGATACTGTTACAGTGAAATGCGGTCACTGTGGTAACCTCTCCTTTCTCAGCACCAGACCTCCACCTCAGGTCCAAAGGTTTCAGGGTCACAGTTTGAGCCTTCAGCAGGGTTTTTTCAGTGATCTCAGAAAGGGTACCGAAGGCTCTTCATCTACTTTCTCAACATCAGCTACCGAACCCTTGTCTCCAAAAGCACCCTTCGTAGTGAAACCACCTGAGAAGAAACACCGGCTTCCATCTGCTTACAACAGATTCATGAAGGAGGAAATCCAGCGCATCAAAGCAGCCAACCCTGACATTCCACATCGAGAAGCATTTAGTGCAGCCGCAAAAAATGTAAATTGA 471 0.4841 MNQLDEKVTMDLATPAEQHLCYVRCNFCNTVLAVGIPSKRVLDTVTVKCGHCGNLSFLSTRPPPQVQRFQGHSLSLQQGFFSDLRKGTEGSSSTFSTSATEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPDIPHREAFSAAAKNVN* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00419 156 MobiDBLite consensus disorder prediction 86 115 - -
Pte6g00419 156 Pfam YABBY protein 17 154 IPR006780 GO:0007275
Pte6g00419 156 SUPERFAMILY HMG-box 102 152 IPR036910 -
Pte6g00419 156 PANTHER PROTEIN YABBY 6-RELATED 16 155 IPR006780 GO:0007275
Pte6g00419 156 MobiDBLite consensus disorder prediction 86 103 - -
Pte6g00419 156 Gene3D High mobility group box domain 103 154 IPR036910 -
Pte6g00419 156 CDD HMG-box_SF 119 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00419 Pte-Chr6 4944810 4946226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00419 4 154 C2C2-YABBY Transcription Factor Family AT1G69180 65.385 9.30e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pte6g00419 YABBY 3.2e-49 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00419 K25796 - rcu:8264609 231.876