Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00385 ATGGCAAACATTGATAAGCTTGTCATTTTCATCACCTTGTTATTATCTTCATTTTTCATAACAGCGCTATCAAAACGTTCTTCTTCTTCTTCTTCCAGTGACATAACCTGGTGGTGCAACTTGACTCCACACCCAGAGCCATGCAACCATTTCATGAGACAAAGTCAACACAACTTCAAACCAAATCACAGGTCCAAGTTCGTGACGATGCTGGTGCAGTTAGCCCTAGAGAGAGCCTTCAGCTCTAAAATCCAAGCCACTGAGTATAAACAAAAATGTCAGTGCAAAGAACAGAAAGCCGCATTGGCGGATTGTTTGAAGCTCTACGATCAAACCATCTTCCATCTCAACCGAACTCTCTACGGTTTACGCAGAAAAAAATGGTGTTCAAGCTTTGATGCACAGACATGGCTTAGCACAGCTTTTACGAACGTCGAAACATGTCGAGCTGGGGCTTTAGATTTGAATGTTACAAAATTCATAGAACCCCTAGTGCAAACCAATGTTTCACAGCTCATAAGCAATAGCTTGGCCATCAATTCAGTATTCTTGAAAGGAGTGAAAAATCAGACTACAGATGATTTTCCGAGCTGGCTTACGATGCAAGAAAGGCGAATGTTGCTAGATCGTTCAATAAAGCCTCATCTTGTGGTTGCTAAAGATGGGTCTGGACATTTTAGGACAGTTCAAGCTGCACTAGATGCTGCAGGAAAGAGAAGATATCCTGGGAGATTTATTATCTATGTGAAGAGAGGGATTTATGTAGAGAATATTGAAGTTAGCAAGAATAACAATGATATCATGCTGGTTGGGGATGGGGTACGATTCACTATAATCACTAGTAGTAGGAGTGTTCAAGGGGGCTTCACCACCTACAGCTCTGCAACCGCTGGCATTGATGGTCTTCACTTCATCGCCCGGGACATTACCTTCCAAAATTCTGCCGGACCTAAGATGGGTCAGGCAGTGGCGCTCCGCTCTGCCTCTGACCTCTCGGTTTTCTACCGATGCGGCTTCCAAGGATACCAAGACACTCTCATGGTTCACTCTCAGAGACAATTCTACAGGGAATGTTTCATTTATGGCACAATAGACTTCATATTTGGAAATGCGGCTGTTGTATTCCAAAATTGCATGATTTATGTAAGAAGGCCTCAACCGGGCCAAGCCAACATGATCACAGCCCAAGGTCGAGGAGACCCATTTCAGAACACTGGGATTACGATCCAAAATTGTCAAATTCGGGCCGCACCGGACCTCCTCCCCTTAGTTCGGACTATCCAAACGTATCTGGGCCGACCATGGCAGCAATATGCTAGAGTTGTAGTCATCAAAAGCTATTTGGACAATTTGATAAGCCCATTGGGCTGGTCCAGGTGGGGAAACACTGATTTCGCTGTGAACACATTGTACTTTGGAGAGTACATGAACATTGGGCCTGGATCATCAACTGCACAGAGAGTCCGTTGGCGTGGTTTTCATAAAATAACGAGAGCTACTGAGGCAAACCCCTTCACCGTCTCAAGATTACTAGCTGGACGGGCATGGTTGCCTGCATCTGGAGTACCCTTTATATCTGGCCTTTGA 1587 0.448 MANIDKLVIFITLLLSSFFITALSKRSSSSSSSDITWWCNLTPHPEPCNHFMRQSQHNFKPNHRSKFVTMLVQLALERAFSSKIQATEYKQKCQCKEQKAALADCLKLYDQTIFHLNRTLYGLRRKKWCSSFDAQTWLSTAFTNVETCRAGALDLNVTKFIEPLVQTNVSQLISNSLAINSVFLKGVKNQTTDDFPSWLTMQERRMLLDRSIKPHLVVAKDGSGHFRTVQAALDAAGKRRYPGRFIIYVKRGIYVENIEVSKNNNDIMLVGDGVRFTIITSSRSVQGGFTTYSSATAGIDGLHFIARDITFQNSAGPKMGQAVALRSASDLSVFYRCGFQGYQDTLMVHSQRQFYRECFIYGTIDFIFGNAAVVFQNCMIYVRRPQPGQANMITAQGRGDPFQNTGITIQNCQIRAAPDLLPLVRTIQTYLGRPWQQYARVVVIKSYLDNLISPLGWSRWGNTDFAVNTLYFGEYMNIGPGSSTAQRVRWRGFHKITRATEANPFTVSRLLAGRAWLPASGVPFISGL* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00385 528 Pfam Pectinesterase 216 513 IPR000070 GO:0030599|GO:0042545
Pte6g00385 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 184 IPR035513 -
Pte6g00385 528 Pfam Plant invertase/pectin methylesterase inhibitor 35 179 IPR006501 GO:0004857
Pte6g00385 528 NCBIfam pectinesterase inhibitor domain 7 181 IPR006501 GO:0004857
Pte6g00385 528 CDD PMEI-like_3 37 185 - -
Pte6g00385 528 PANTHER PECTINESTERASE 18 518 - -
Pte6g00385 528 SMART PMEI_2 30 179 IPR006501 GO:0004857
Pte6g00385 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 183 IPR035513 -
Pte6g00385 528 SUPERFAMILY Pectin lyase-like 213 527 IPR011050 -
Pte6g00385 528 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Pte6g00385 528 Gene3D - 209 528 IPR012334 -
Pte6g00385 528 FunFam Pectinesterase 209 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00385 Pte-Chr6 4273608 4275302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00385 20 529 Carbohydrate Esterase AT5G51490 57.965 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00385 K01051 - pvy:116126511 686.411