Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00369 ATGGAAACAATACAAGTTTCTTCACACGACCAACCTTCCTACTGTCAATTTCAGAACGCGCAGCCGTCGGAACAACCGACTGTAACATCGGATAATGATAACCCATCGAAAACTGCAAGTTTCCACGGGCAGAACAATAACCACGACGCCGTTCATGAATCTGAATCTAAGCCAGCTGATAATTCATCGAAGCCCGAGCTCCTTAGACCATTGTTGTCGGAGAACGGATTCACGAATACGAATACCCAGAGTGGTACCGATAGGGATCAGTCTGGTGGCGAGGAGGAGACTACAAGTAGAAGGCGAAGGAGGAGTCGGTGGGACCCACAGCCTGAAACGAATGACCAGAACGGTGGGAGTGGTGGTGGTGAAGCTGGTAGTGGACCAAAGAAGAGGAAGTCAAGATGGGCTGATGATGAGCCAAAACCAGTTATTCAGCTTCCTGATTTTATGGGCGGTATTGAATTTGATCCTGAAATTCAAGCTTTGAATAGTAGGTTACTTGAGATTAGTAGGATGTTACAATCTGGTTTACCTCTAGATGATCGTCCTGAAGGTGCTAGATCACCTTCACCTGAACCTTTATATGATAATATGGGAATTAGGATTAATACTCGGGAGTATCGTGCTCGAGAGAGATTGCAAAAGGAGAGACAAGAAATTATTTCTCAGATTTTAAAGAAAAACCCTGCTTTTAGGCCTCCTGCTGATTACAGGCCACCAAAGCTTCATAAGAAGCTCTATATACCTATGAAGGAGTATCCCGGATACAACTTCATAGGCCTTATTATTGGCCCCAGGGGAAATACTCAGAAACGGATGGAGAAAGAAACCGGTGCCAAAATTGTTATCAGGGGCAAGGGATCGGTGAAGGAGGGTAGATTGCAACAGAAACGGGATTTGAAACCTGATCCGTCAGAGAATGAGGATTTACATGTTCTGGTTGAGGCGGAGACCCAGGAATCACTCGAAGCTGCTGCAGGGATGGTAGAGAAGCTCTTACAACCTGTGGATGAGGTTTTGAATGAGCATAAGAGACAACAACTTCGGGAGCTTGCAGCTCTTAATGGGACAATTAGGGATGAGGAGTTCTGTCGGTTGTGTGGTGAACCAGGTCATCGGCAGTATGCTTGTCCGACCCGCACTTCTACATTTAAGAGTGAAGTTGTTTGTAAGTTTTGTGGGGATGGCGGTCATCCCAGTATTGACTGTCCAGTAAAGGGTGTTACCAGTAAAAAGATGGATGATGAGTATCAAAACTTCTTGGCAGAGTTAGGAGGGACAGTTCCTGAATCAGCCACAAAGCAAAGTAGCACATTGGCAATTGGTTCAGGTAGTTCTGGGAGTAATCCACCTTGGGCAAACAATTCCAGTTCGGCAAGCAGTACACCACAAGCTGGTTTAGGGGCCACTGGACTTAAGAAGGAAATTGATGATACTAATCTGTACATCGGGTATTTGCCACCGACTCTTGACGATGATGGGTTGATTCAGCTGTTTCAACAATTTGGTGACATTGTGATGGCCAAAGTTATTAAGGACCGCGCAACTAATCTGAGTAAAGGTTATGGTTTTGTCAAGTATGCTGATATCCAAATGGCTAATAATGCTATTATGGCTATGAATGGTTATCGATTTGAAGGACGGACAATAGCAGTGAGAGTTGCTGGCAAACCACCTCAGCCAACCGTATCTCCTGGTCCTCCAGCATCTGCAATCGCACCAACATATCCTGTTACAAGCCAAGCGGTTGTGGCATATCCATCTCAGCAATATGCGACTGGTGGTCCCTTGGGATCTGCACCTCGTCCAAGTTATATTGGTGCCCCTGTTTCATGGGGTCCTCCCGTTCCTCCTCCTTATGCTGCGTATCCTCCTCCCCCACCTGGGTCAACGATGTATCATTCTGTACAAAGTCAACCTATGCCTCCATATGGCGTTCAGTATCCTCCATTAGTTCAGACAGTTCCACCTGGTGCCCCTTCCCAAGTAGCTGCTACTGGTGAATTGCAACATAGTTATCCTCCTGGAGTACCATCAGACAGTAGTACTACCACTCAATCTGCAACGGCTAATATCTATGGATCAATTCCATCAGCTTCTCAACCTACATATCCTACATCTTATGCGTATTCACCATACTATGGTGTTCCACCACCTCCTCCTGGGCCGGTACCCTCGTCGTCTGGAGACCAATCGCAGAGCATCGGAAATGTGCCTTGGGCTTCAAATCCTCCTTTACCTACAACTGCGTCTGTCTCAGCAGACCAATCCCAGAGCCTTGGAAATGTGCCTTGGGCCTCGAATGCCGCAGTGCCTCCTCCGACTACCGGCAACGCAACCTATGGGACAGACTCTGAGTATGAGAAATTCATGGCTGAGATGAAATGA 2391 0.4676 METIQVSSHDQPSYCQFQNAQPSEQPTVTSDNDNPSKTASFHGQNNNHDAVHESESKPADNSSKPELLRPLLSENGFTNTNTQSGTDRDQSGGEEETTSRRRRRSRWDPQPETNDQNGGSGGGEAGSGPKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPLYDNMGIRINTREYRARERLQKERQEIISQILKKNPAFRPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEFCRLCGEPGHRQYACPTRTSTFKSEVVCKFCGDGGHPSIDCPVKGVTSKKMDDEYQNFLAELGGTVPESATKQSSTLAIGSGSSGSNPPWANNSSSASSTPQAGLGATGLKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGDIVMAKVIKDRATNLSKGYGFVKYADIQMANNAIMAMNGYRFEGRTIAVRVAGKPPQPTVSPGPPASAIAPTYPVTSQAVVAYPSQQYATGGPLGSAPRPSYIGAPVSWGPPVPPPYAAYPPPPPGSTMYHSVQSQPMPPYGVQYPPLVQTVPPGAPSQVAATGELQHSYPPGVPSDSSTTTQSATANIYGSIPSASQPTYPTSYAYSPYYGVPPPPPGPVPSSSGDQSQSIGNVPWASNPPLPTTASVSADQSQSLGNVPWASNAAVPPPTTGNATYGTDSEYEKFMAEMK* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00369 796 ProSiteProfiles Type-1 KH domain profile. 258 330 - -
Pte6g00369 796 Gene3D - 157 234 IPR047086 -
Pte6g00369 796 Gene3D - 442 555 IPR012677 -
Pte6g00369 796 ProSiteProfiles Zinc finger CCHC-type profile. 365 379 IPR001878 GO:0003676|GO:0008270
Pte6g00369 796 FunFam splicing factor 1 363 416 - -
Pte6g00369 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 480 558 IPR000504 GO:0003723
Pte6g00369 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 482 551 IPR000504 GO:0003723
Pte6g00369 796 Pfam Splicing factor 1 helix-hairpin domain 132 239 IPR032570 -
Pte6g00369 796 SMART kh_6 243 335 IPR004087 GO:0003676
Pte6g00369 796 MobiDBLite consensus disorder prediction 720 796 - -
Pte6g00369 796 MobiDBLite consensus disorder prediction 128 142 - -
Pte6g00369 796 Gene3D K Homology domain, type 1 235 363 IPR036612 GO:0003723
Pte6g00369 796 MobiDBLite consensus disorder prediction 728 784 - -
Pte6g00369 796 PANTHER RNA-BINDING PROTEIN RELATED 89 601 IPR045071 -
Pte6g00369 796 SUPERFAMILY Retrovirus zinc finger-like domains 361 407 IPR036875 GO:0003676|GO:0008270
Pte6g00369 796 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 243 369 IPR036612 GO:0003723
Pte6g00369 796 MobiDBLite consensus disorder prediction 1 146 - -
Pte6g00369 796 CDD KH-I_BBP 242 335 - -
Pte6g00369 796 MobiDBLite consensus disorder prediction 48 62 - -
Pte6g00369 796 SMART rrm1_1 481 554 IPR000504 GO:0003723
Pte6g00369 796 Gene3D - 364 416 - -
Pte6g00369 796 MobiDBLite consensus disorder prediction 89 110 - -
Pte6g00369 796 MobiDBLite consensus disorder prediction 1 47 - -
Pte6g00369 796 Pfam KH domain 258 330 IPR004088 GO:0003723
Pte6g00369 796 SMART c2hcfinal6 364 380 IPR001878 GO:0003676|GO:0008270
Pte6g00369 796 SMART c2hcfinal6 390 406 IPR001878 GO:0003676|GO:0008270
Pte6g00369 796 MobiDBLite consensus disorder prediction 177 198 - -
Pte6g00369 796 MobiDBLite consensus disorder prediction 432 468 - -
Pte6g00369 796 MobiDBLite consensus disorder prediction 288 309 - -
Pte6g00369 796 MobiDBLite consensus disorder prediction 73 88 - -
Pte6g00369 796 MobiDBLite consensus disorder prediction 432 470 - -
Pte6g00369 796 SUPERFAMILY RNA-binding domain, RBD 476 568 IPR035979 GO:0003676
Pte6g00369 796 FunFam splicing factor-like protein 1 460 562 - -
Pte6g00369 796 FunFam splicing factor-like protein 1 235 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00369 Pte-Chr6 3923034 3926580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00369 480 611 Eukaryotic Initiation Factors Gene Family AT3G16380 30.435 1.90e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00369 K13095 - gmx:100800982 1083.94