Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00341 ATGCCTCTGACTCTGAGAATGGAAAGTACTGATCATACACAGAAAGCAGTAAATCCTCGTGTGAAGAAAACCTCTATCACGAAAATTACCAAAGCTTCTAAATGCGGAAGAAAAATATCTATCAATAACTTCAAGTCAAAGGCTACACCCAAAGGAGATGATGATAAGTCATCCAAATCTAATAAATTTGACTTGCAAGATCTAAATTGGCTAAATAGTATGTCTGAATGTCCAGTGTATTGTCCATCAGCGCAGGAGTTTGAGGACCCTTTTGCTTATATACAGAGGATTTCTCCTGAAGCTTCCAAGTATGGAATATGCAGGATTGTTTGTCCAATAAGCACTGCAGTTCCATCAGGTGCTGTACTGCTGAAAGAGAAGAAAGACTTTAAGTTTGAAACAAATGTGCAGCCCCTTTGGCTTTCCGAATGGAGTGGAGATGACAGAATTGTTTTCTCTTTGAGAGGGAGAAAATACACATACCGTGAATTCGAGACCATGGCGAATATGGCTTTCGCGAGTCGATTTTACTCCTCAGCAGGTCTCCCTTCTCTGTACATGGAAAAAGAGTTCTGGCTTGAGATGGCCTATGGAGAGAAGAGCACTGTTGAATATGGAGTCAATGTTGATGGTAGTGCCTTTTCAAGTAGCTCTATTGATCAGCTTGCCAATAGCAAATGGAACTTGAAGAATTTCTCCCGGATGCAAAATTCCACATTGCGCCTGATTGAAAAAGTGATTCCGGGAATAACAGATCCTATGCTTTATATTGGAATGATATTCAGTATGTTCGCTTGGCACGTGGAGGATCACTACTTGTACAGCATTAACTACCATCACTCAGGGGCAGCTAAAACATGGTATGGTGTGCCTGGACTTGCAGCTCCTTTATTTGAGAAAGTAGTATTAGACCATGTCTATTCAAGAGAAATCTTATCAGAAAACGGTGTGGATGGAGCTTCCAAAATTCTTGCTGAAAAAACCACAATGTTTCCACCAAATCTCTTGTTACAACATGGTGTGCCAGTTTACAAAGCAGTCCAGATGCCAGGAGAGTTTGTCATCACCTTTCCTCGAGCATATCATGCAGGATTTAGCCACGGATTCAACTGCGGAGAAGCAGTGAATTTTGCAGTTGGGGATTGGTTTCCAATGGGAGCAGTTGCAAGGAAGCGTTATGGACATCTTAGGGTACTCCCCATTATCCCATACGAGGAACTTCTTTGCAAAGAAGCAATGCTGCTTTTTAACAAGTCTTCAAAACTTGGTGGGTCAGACCAGCCAGCTCAACCTTTGGTATCCTACCATGGAATTAAGGAGTCCTTTGTGCAGTTGATGCATTTTCATAAGCAGGCTCTCCATAAACTTGATCAAATAAGAAAATTACCTATTTCTATTGATTCCCTTGGAACACTGACATGCAGTCGGTGCTTTAGGGATTGCTATTTAGGGTACATCCTTTGCAGCCGTTGCTACTCTCATCCGATTTGTCTATTCCATGAGGTTGAGTCATTGACTTGTTCATGTGGGCACGAGTGCACTATTTTTCTGAGGGAAGATCTGCAGGCCATGGAGGATGCAGCTTCCAGGTTTCAGAAGGAAGGGAATGATTTGATGGATGCTAAAGGAGTAACCAAGTGTAGAGAAATTCGCTCACCAGCAAACATTTGCAATTGCACAGGAAATGGAGATATGAAATATTTGAAGGATGGTACAGGAAAAAGAGGGGCCAAAAGATCAGCAGGATTGGTGGAATCAGGACCCCTTGAACTCAATTCAGAAAAGCGTCATGAAAGGAGAAGATGGACACCGAAATTGCAGTATCTGAAATGA 1833 0.4206 MPLTLRMESTDHTQKAVNPRVKKTSITKITKASKCGRKISINNFKSKATPKGDDDKSSKSNKFDLQDLNWLNSMSECPVYCPSAQEFEDPFAYIQRISPEASKYGICRIVCPISTAVPSGAVLLKEKKDFKFETNVQPLWLSEWSGDDRIVFSLRGRKYTYREFETMANMAFASRFYSSAGLPSLYMEKEFWLEMAYGEKSTVEYGVNVDGSAFSSSSIDQLANSKWNLKNFSRMQNSTLRLIEKVIPGITDPMLYIGMIFSMFAWHVEDHYLYSINYHHSGAAKTWYGVPGLAAPLFEKVVLDHVYSREILSENGVDGASKILAEKTTMFPPNLLLQHGVPVYKAVQMPGEFVITFPRAYHAGFSHGFNCGEAVNFAVGDWFPMGAVARKRYGHLRVLPIIPYEELLCKEAMLLFNKSSKLGGSDQPAQPLVSYHGIKESFVQLMHFHKQALHKLDQIRKLPISIDSLGTLTCSRCFRDCYLGYILCSRCYSHPICLFHEVESLTCSCGHECTIFLREDLQAMEDAASRFQKEGNDLMDAKGVTKCREIRSPANICNCTGNGDMKYLKDGTGKRGAKRSAGLVESGPLELNSEKRHERRRWTPKLQYLK* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00341 610 SMART JmjN_1 76 112 IPR003349 -
Pte6g00341 610 Gene3D Cupin 70 419 - -
Pte6g00341 610 MobiDBLite consensus disorder prediction 590 610 - -
Pte6g00341 610 ProSiteProfiles JmjC domain profile. 221 394 IPR003347 -
Pte6g00341 610 Pfam jmjN domain 78 110 IPR003349 -
Pte6g00341 610 SUPERFAMILY Clavaminate synthase-like 180 410 - -
Pte6g00341 610 SMART cupin_9 224 394 IPR003347 -
Pte6g00341 610 FunFam Lysine-specific demethylase isoform A 72 421 - -
Pte6g00341 610 Pfam C5HC2 zinc finger 474 526 IPR004198 -
Pte6g00341 610 PANTHER LYSINE-SPECIFIC DEMETHYLASE 70 531 - -
Pte6g00341 610 MobiDBLite consensus disorder prediction 586 610 - -
Pte6g00341 610 ProSiteProfiles JmjN domain profile. 77 118 IPR003349 -
Pte6g00341 610 Pfam JmjC domain, hydroxylase 254 377 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00341 Pte-Chr6 3595301 3598144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00341 74 538 JUMONJI Transcription Factor Family AT2G34880 32.216 1.29e-64 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pte6g00341 JmjC 3.3e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00341 - - qsa:O6P43_001767 755.362