Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00331 ATGGGTACACAGCCGCAATGTAGAGAGGAGGAAGACGGCGAAGTGGAGGAGGTGCCATCGGGTCTTGGAGAAACGGTTTCAGGTCAATCCATGACTACTAGTCGGAGTATCGGGTCGCCGTCCAGCAGGAGTGAGGCGACTATGGTGACACAAGCTAGTGAGAGCACTTTCCTTAGCCTCAACGATCTCGACCTTCACAGTGACGAAGCTGGATCAAAAGGCGCCGTTGCTAGTAAGAAAAAAAAGAGATGTCAACGTGTTGTTGGAGGTGACAAAAGTGGGAGAGGGCTCCGTCAATTTAGCATAAAAGTTTGTGAGAAAGTGGAAAGCAAGGGAAGGACTACTTATAATGAGGTTGCAGATGAACTTGTGGCAGAGTTTACTGATCCTTGCAGTAGTTTATTATCTCCTGATCAGCGACAGTTTGATGAGAAAAATATCAGGCGAAGGGTTTATGATGCATTGAACGTTCTCATGGCGATGGATATTATATCCAAGGACAGAAAGGAAATACAGTGGATGGGTCTACCACGTAATAGTTTTAGTGATATTGAAGAACTGAAGGCAAACTGTCATGCACTCAGAACTCGGATTGAGAAGAAAGCAGCCTATCTGCGAGAGCTGGAGGATCAATACGTAGGTCTTCAGAATCTCATCCAACGAAATGAGCAATTATATGGTTCCGGAAATACTCCCACTGGCGGTGTAGCTTTACCTTTTATTATTGTTCAGGCCTCCATAATGATTTTAGGTGGCAGCACCACTGCCAACAAAACCATAAACAAACAGCACTCTGAAGTTTCCAGCTGCAAGAGATAA 819 0.4518 MGTQPQCREEEDGEVEEVPSGLGETVSGQSMTTSRSIGSPSSRSEATMVTQASESTFLSLNDLDLHSDEAGSKGAVASKKKKRCQRVVGGDKSGRGLRQFSIKVCEKVESKGRTTYNEVADELVAEFTDPCSSLLSPDQRQFDEKNIRRRVYDALNVLMAMDIISKDRKEIQWMGLPRNSFSDIEELKANCHALRTRIEKKAAYLRELEDQYVGLQNLIQRNEQLYGSGNTPTGGVALPFIIVQASIMILGGSTTANKTINKQHSEVSSCKR* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00331 272 Gene3D Transcription factor DP 181 269 IPR038168 -
Pte6g00331 272 PIRSF Txn_factor_DP 3 248 IPR015648 GO:0005667|GO:0051726
Pte6g00331 272 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667|GO:0006355
Pte6g00331 272 MobiDBLite consensus disorder prediction 23 53 - -
Pte6g00331 272 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667|GO:0006355
Pte6g00331 272 SUPERFAMILY "Winged helix" DNA-binding domain 95 176 IPR036390 -
Pte6g00331 272 PANTHER TRANSCRIPTION FACTOR DP 24 260 IPR015648 GO:0005667|GO:0051726
Pte6g00331 272 SMART DP_2 182 266 IPR014889 -
Pte6g00331 272 MobiDBLite consensus disorder prediction 1 53 - -
Pte6g00331 272 FunFam Transcription factor-like protein DPB 87 180 - -
Pte6g00331 272 SUPERFAMILY E2F-DP heterodimerization region 182 246 IPR037241 -
Pte6g00331 272 Coils Coil 205 225 - -
Pte6g00331 272 Pfam Transcription factor DP 183 246 IPR014889 -
Pte6g00331 272 Gene3D - 88 180 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00331 Pte-Chr6 3486493 3491356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00331 93 246 E2F-DP Transcription Factor Family AT5G02470 45.806 3.02e-46 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pte6g00331 DP 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00331 K04683 - qsa:O6P43_019777 354.369