Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00295 ATGGCCAAAACGGGAGTGGTGGATTCTGATTCTTCTTCAGTGGTGACCGAGACAACGGAGTTGAAGAAAGAGTTGCAGAGACTGGTGAGAGCTGTCGTGGATGATGAAGAACATGGTAGTACTGAAGCCATTGACCGAGCTAAAGAAATTCTTTGTTCTTTAAAGGAGGTGAAGCTCAAGAAGAGATCATTTTCTTTGAAGTCTCATGAAACTCTGGTATGTCCTGAAGAGTTTAGGTGCCCACTTTCTAAGGAATTAATGAGAGATCCTGTCATTGTGGCTTCTGGGCAGACATACGATAGACCGTTCATTGAAAAATGGATAAAAGCTGGAAAACGAACTTGCCCCTCCACTCAACAAGTACTGTCTCACATTAATCTCACTCCAAATCACTTGGTCCAACAATTGATATCACAATGGTGCAAAAGTAGAGGCATTCAGCCATCTGATCCTGTTCACTACATCAGAAAGGATGGGATGACAAAAGATGATCGTGATCATTTCTTATCTTTGCTCGATCAGATGTCGTCAACACTTTGTGATCAAAAGGCTGCGGCAAGAGAACTTCATTTGCTGACGAGGACGACACCCTCGTTTAGAGCACTTTTTGGAGAGTATGAAAACGCTATACCCCAATTACTTAGTCCAGTCTCAGGGTGTGGCTCTCTGAGTGGCATTCAGCCTGATCTCTTAGAAGATGTGATCACAATACTGTTGAATGTTTCAATCCATGACGGCAACAAGGAACTAGTTGCCGAGACCCCTATTGTGATTCCATTGCTAATTGAAGCTATGAAGTCAGGAACCATTCAAACAAGGACCAATGCAGCTGCAACAATTTTCACTCTGTCTGCTGTAGATTCGAACAAGGCACTCATTGGAGAATCCGGTGCATTAAAGCCTTTGATTGACATTTTAGAAGAAGGGCACCCCTTAGCCATGAAAGATGTTGCTTCAGCAATTTTCAGCCTGTGTGTCATCCAGGAGAACAAAGAAAGAGCTGTGATGGATGGCGCTGTGAGTGTAATTCTCAGGAAAATCATGAACCGGAAGCATGTTGACGAGTTACTAGCAATCCTTGCAATGCTTGCCAGCTATCAAAAAGCTGTGGAAGATATAGGAGACCTGGGTGCAGTTGCAACCTTGTTGAGCATCCTTAGAGAGAGCTCTTGTGAACGTACCAAGGAGAACTGCATAGCAATTCTGCACACAGTCTGTCTCAACAACAGGAGCAAGTTGAGAGAAATCAAAGAAGAAGAACACATCTATAGAACAATCTCTGAGCTTGCTTGCAGCGGAACCTCAAGAGCTAAGAGGAAGGCCACTGGGATTCTTGAGAGACTGCGTAGGACTATCAATATAACACACAGAGCATGA 1377 0.4379 MAKTGVVDSDSSSVVTETTELKKELQRLVRAVVDDEEHGSTEAIDRAKEILCSLKEVKLKKRSFSLKSHETLVCPEEFRCPLSKELMRDPVIVASGQTYDRPFIEKWIKAGKRTCPSTQQVLSHINLTPNHLVQQLISQWCKSRGIQPSDPVHYIRKDGMTKDDRDHFLSLLDQMSSTLCDQKAAARELHLLTRTTPSFRALFGEYENAIPQLLSPVSGCGSLSGIQPDLLEDVITILLNVSIHDGNKELVAETPIVIPLLIEAMKSGTIQTRTNAAATIFTLSAVDSNKALIGESGALKPLIDILEEGHPLAMKDVASAIFSLCVIQENKERAVMDGAVSVILRKIMNRKHVDELLAILAMLASYQKAVEDIGDLGAVATLLSILRESSCERTKENCIAILHTVCLNNRSKLREIKEEEHIYRTISELACSGTSRAKRKATGILERLRRTINITHRA* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00295 458 SUPERFAMILY ARM repeat 159 448 IPR016024 -
Pte6g00295 458 ProSiteProfiles U-box domain profile. 73 147 IPR003613 GO:0004842|GO:0016567
Pte6g00295 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 147 IPR013083 -
Pte6g00295 458 FunFam RING-type E3 ubiquitin transferase 73 147 - -
Pte6g00295 458 CDD RING-Ubox_PUB 75 127 IPR045210 -
Pte6g00295 458 SMART Ubox_2 77 140 IPR003613 GO:0004842|GO:0016567
Pte6g00295 458 PANTHER U BOX DOMAIN-CONTAINING 19 449 - -
Pte6g00295 458 SUPERFAMILY RING/U-box 73 150 - -
Pte6g00295 458 Gene3D - 166 453 IPR011989 -
Pte6g00295 458 Pfam U-box domain 75 144 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00295 Pte-Chr6 3165402 3170152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00295 136 459 U-box Gene Family AT3G07360 58.006 1.30e-124 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00295 - - mnt:21398908 635.95