Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00293 ATGGAGGAGGAGTTTGATATGCCACCAGCTGAGGAGATAAACGAAGACTTTGATCTTGACGATGAGAGTCCCATTCTCAAGGTTGGTGAAGAGAAAGAGATCGGTATACAAGGTTTGAAGAAGAAGCTTGTCAAGGAAGGTGAAGGGTGGGATACTCCTGAAGTTGGCGACGAGGTTGAAGTGCATTACACCGGCACTCTGCTTGATGGGACGAAGTTTGATTCAAGTCGAGACAGGGGAACACCTTTCAAGTTTACTCTTGGACAAGGGCAAGTCATAAAAGGATGGGACGAGGGAATCAAGACCATGAAGAAAGGTGAAAGTGCAATATTTACCATCCCACCTGAGCTGGCATATGGCGAGTCTGGATCTCCTCCTACAATCCCTCCTAGTTCTACACTACAGTTTGATGTTGAGCTGCTATCTTGGACAAGTGTCAAGGACATATGCAAGGATGGAGGCATATTAAAGAAGATAATTGCTGAGGGTGAGAAATGGGAGAATCCGAAGGATGCAGATGAAGTCTTAGTCAAATATGTAGCTCGGCTTGAGAATGGAACACTAGTTTCAAAGTCGGACGGAATTGAGTTCGTGGTTAAAGACGGTCAATTCTGCCCTGCATTATCAAAATCAGTTAAAACCATGAAGAAGGGGGAGAAAGTACTCTTAACAGTTAAACCAAAATATGGATTTGGCGAAAGTGGCAAACCTGCACAAGGTGATGAGGCGGCAGTTCCACCTAATGCAACACTACATATTACTCTTGAGTTGCTATCGTGGAAGACTGTGTCAGAAGTGACTGATGACAAGAAGGTTCTGAAGAAGATACTGAAAGAGGGTGAGGGATATGAACATCCTAATGAAGGAGCTATAGTTAAAGTGAAACTAATTGGTAAATTGGATGATGGCACTGTTTTTGTGAAGAAGGGCCACGGTGAAGGAGAGGAACTTTTTGAGCTCAAGACAGATGAGGAGCAAGTTGTTGATGGGCTTGACAGAGCTGTCATGACCATGAAAAAGGGTGAACTCGCCTTATTGACCATTGCTCCAGAGTATGCTTTCGGGTCATCTGGGGCCGAGCAAGAACTGGCTGCAGTTCCACCTAACTCTGCTGTTTATTACGAGGTGGAGATGGTATCATTTGAGAAGGAGAAGGAATCATGGGATATGAATACTCCAGAGAAGATTGAAGCTGCTGGTAAGAAAAAGGAACAAGGGAATGCATTGTTCAAGGCGGGGAAGTATGCTAAAGCTTCAAAGAGATATGAAAAGGCAGTGAAGTTCATCGAATATGATGCTAGCTTCAGTGAAGAGGAAAAGAAACAATCCAAGGCTTTGAAGGTTGCGTGCCAATTGAATAATGCCGCTTGCAAGTTGAAGTTGAAAGATTACAAACAAGCAGAGAAGTTGTGTACAAAGGTGCTGGAACTAGAGACCACAAATGTTAAGGCCCTGTACAGAAGGGCACAGGCATATATACAATTGGCTGACTTGGATTTGGCTGAATTTGACATTAAGAAAGCCCTTGAGATAGATCCTGACAACAGGGACGTCAAGCTGGAATACAAGACACTAAAGGAGAAAATGAAAGAGTACAACAAGAAGGAAGCTAAATTTTACGGGAACATCTTTGCTAAGATGAATAAGTTGGGTTCTCTAGACATCAATAAAGATGCGGAGAAGATGCTGAGCCCATGA 1698 0.4346 MEEEFDMPPAEEINEDFDLDDESPILKVGEEKEIGIQGLKKKLVKEGEGWDTPEVGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDEGIKTMKKGESAIFTIPPELAYGESGSPPTIPPSSTLQFDVELLSWTSVKDICKDGGILKKIIAEGEKWENPKDADEVLVKYVARLENGTLVSKSDGIEFVVKDGQFCPALSKSVKTMKKGEKVLLTVKPKYGFGESGKPAQGDEAAVPPNATLHITLELLSWKTVSEVTDDKKVLKKILKEGEGYEHPNEGAIVKVKLIGKLDDGTVFVKKGHGEGEELFELKTDEEQVVDGLDRAVMTMKKGELALLTIAPEYAFGSSGAEQELAAVPPNSAVYYEVEMVSFEKEKESWDMNTPEKIEAAGKKKEQGNALFKAGKYAKASKRYEKAVKFIEYDASFSEEEKKQSKALKVACQLNNAACKLKLKDYKQAEKLCTKVLELETTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNIFAKMNKLGSLDINKDAEKMLSP* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00293 565 SMART tpr_5 448 481 IPR019734 GO:0005515
Pte6g00293 565 SMART tpr_5 399 432 IPR019734 GO:0005515
Pte6g00293 565 SMART tpr_5 482 515 IPR019734 GO:0005515
Pte6g00293 565 SUPERFAMILY FKBP-like 34 148 - -
Pte6g00293 565 Coils Coil 515 535 - -
Pte6g00293 565 FunFam Peptidylprolyl isomerase 148 261 - -
Pte6g00293 565 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Pte6g00293 565 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 152 264 - -
Pte6g00293 565 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Pte6g00293 565 MobiDBLite consensus disorder prediction 1 19 - -
Pte6g00293 565 Gene3D - 30 146 IPR046357 GO:0003755
Pte6g00293 565 Gene3D - 262 383 IPR046357 GO:0003755
Pte6g00293 565 MobiDBLite consensus disorder prediction 1 21 - -
Pte6g00293 565 FunFam Peptidylprolyl isomerase 387 542 - -
Pte6g00293 565 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 382 IPR001179 GO:0003755
Pte6g00293 565 SUPERFAMILY TPR-like 388 547 IPR011990 GO:0005515
Pte6g00293 565 SUPERFAMILY FKBP-like 148 264 - -
Pte6g00293 565 SUPERFAMILY FKBP-like 266 399 - -
Pte6g00293 565 Gene3D Tetratricopeptide repeat domain 385 542 IPR011990 GO:0005515
Pte6g00293 565 FunFam Peptidylprolyl isomerase 262 384 - -
Pte6g00293 565 FunFam Peptidylprolyl isomerase 29 147 - -
Pte6g00293 565 Pfam Tetratricopeptide repeat 482 515 IPR001440 GO:0005515
Pte6g00293 565 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Pte6g00293 565 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 141 IPR001179 GO:0003755
Pte6g00293 565 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 167 258 IPR001179 GO:0003755
Pte6g00293 565 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 378 IPR001179 GO:0003755
Pte6g00293 565 Gene3D - 147 261 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00293 Pte-Chr6 3135563 3145921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00293 1 547 Calmodulin-binding Proteins AT3G25230 79.781 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00293 K09571 - cpap:110821762 949.503