Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte6g00271 | ATGGATGAACCTGAACAAGAAGAATTCTCTGATGCATTTTCTTGCTGCGTTTGCCTGGATCTTTTATACAAGCCTATTGTACTATCTTGCGGTCACATTTCCTGCTTTTGGTGTGTCCATCGTTCAATGAATAGAGTGCGTGAGTCTCACTGTCCACTTTGTAGGCACCCATACTATCATTTCCCTACTGTATGCCAGATGCTTCACTTTTTGCTCTTGAAGATGTATCCTGTAGCATATAAGAGAAGAGAAAGCCTAGTGCTTGATGAAGAAAAGAGAACAGGTTATTTCTCACCCCAATTTCATAGTGCCAGTGGATCACGAATTAAATCTGGTAGTATGTGTGGTTCGCCATCCTCCTCTATTATGGATCATAAATCAAACTCATGTGCAGACCCTTTGGTTTCTTCGGATCATAATAGTTACATAGACATGGAGTTGTCTGATTTGTCTAGAGAAGGTCATGATGAGGGAAAGATAAAGGGAAAATCCGAAGCAAGTGATATTTTATCAGTCGAAGAAAGTCATCACTGTGAGCAAAAGGAACCAATCTCAGTCGCTGATGTGCTTTGCGTAGCATGCAATCAACTGCTGTATCGTCCTGTTTTTCTTAACTGTGGTCATGCCTACTGTGAAGTTTGTATTTTTGACCTATCTGATGAGGTGCTAAAATGTCAACTTTGTCAAAGTCCACATCCCATGGGAGTTCCAAAAGTGTGTTTGGTGCTTGATCAGTTCTTGGAGGAAAGGTTTCCCTATGAATATGCCCAAAGAAGGGACACCATCCAACTCAAAGAAGACAAAGTCAAACAGAAGACTACATCTACATGTTTGGCTGACACTCCGGAAGGAAAAGACAGACTACTGTGTTGGGCAGATCCTAATTCAAAGGTCCACAGAGGGGTTGGTTGTGATTTTTGTGGGATGTTTCCGATAGTTGGGGACCGGTATAAATGCAAAGATTGTGTAGAAAAGATTGGCTTTGATCTTTGCGGTGATTGTTATGACACTTGCTCCAAGCTTCCTGGTCGTTTTAATCAGCAACATACACCAGAACACAAGTTTGAGCATCTACAACCACGTATTGCATTTAGGCTAGCAAGTGGACTCGTAGTGAACAGGGACATTCCCATCATAAGTGTGGCTTCACAAAGTTTAGAAGTGGTATTTCAAGCTCCTGCTTTCTCTGATGATAGTGATGAGGAGCATAACACTGAAACTAGCAATTGA | 1230 | 0.4163 | MDEPEQEEFSDAFSCCVCLDLLYKPIVLSCGHISCFWCVHRSMNRVRESHCPLCRHPYYHFPTVCQMLHFLLLKMYPVAYKRRESLVLDEEKRTGYFSPQFHSASGSRIKSGSMCGSPSSSIMDHKSNSCADPLVSSDHNSYIDMELSDLSREGHDEGKIKGKSEASDILSVEESHHCEQKEPISVADVLCVACNQLLYRPVFLNCGHAYCEVCIFDLSDEVLKCQLCQSPHPMGVPKVCLVLDQFLEERFPYEYAQRRDTIQLKEDKVKQKTTSTCLADTPEGKDRLLCWADPNSKVHRGVGCDFCGMFPIVGDRYKCKDCVEKIGFDLCGDCYDTCSKLPGRFNQQHTPEHKFEHLQPRIAFRLASGLVVNRDIPIISVASQSLEVVFQAPAFSDDSDEEHNTETSN* | 410 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte6g00271 | 409 | ProSitePatterns | Zinc finger RING-type signature. | 206 | 215 | IPR017907 | - | |
| Pte6g00271 | 409 | ProSiteProfiles | Zinc finger ZZ-type profile. | 299 | 363 | IPR000433 | GO:0008270 | |
| Pte6g00271 | 409 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 170 | 260 | IPR013083 | - | |
| Pte6g00271 | 409 | SUPERFAMILY | RING/U-box | 188 | 249 | - | - | |
| Pte6g00271 | 409 | ProSiteProfiles | Zinc finger RING-type profile. | 15 | 55 | IPR001841 | - | |
| Pte6g00271 | 409 | SUPERFAMILY | RING/U-box | 290 | 357 | - | - | |
| Pte6g00271 | 409 | Gene3D | - | 292 | 358 | IPR043145 | - | |
| Pte6g00271 | 409 | SUPERFAMILY | RING/U-box | 8 | 65 | - | - | |
| Pte6g00271 | 409 | PANTHER | UNCHARACTERIZED | 6 | 369 | - | - | |
| Pte6g00271 | 409 | FunFam | E3 ubiquitin-protein ligase PRT1 | 293 | 358 | - | - | |
| Pte6g00271 | 409 | Pfam | Zinc finger, C3HC4 type (RING finger) | 14 | 58 | - | - | |
| Pte6g00271 | 409 | FunFam | E3 ubiquitin-protein ligase PRT1 | 6 | 101 | - | - | |
| Pte6g00271 | 409 | ProSiteProfiles | Zinc finger RING-type profile. | 191 | 229 | IPR001841 | - | |
| Pte6g00271 | 409 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 81 | IPR013083 | - | |
| Pte6g00271 | 409 | SMART | ring_2 | 191 | 228 | IPR001841 | - | |
| Pte6g00271 | 409 | SMART | ring_2 | 15 | 54 | IPR001841 | - | |
| Pte6g00271 | 409 | Pfam | Zinc finger, ZZ type | 299 | 340 | IPR000433 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte6g00271 | Pte-Chr6 | 2826975 | 2832230 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte6g00271 | 5 | 55 | C3H Transcription Factor Family | AT1G74990 | 36.538 | 2.58e-07 | 47.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte6g00271 | - | - | qsa:O6P43_026613 | 483.796 |