Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00270 ATGGATGCAGATTACAAGTGCATTATTAATATGGGGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTGTATATTCACGATTACCTATTGAAAAGAAAATTGCATGCCTCAGCAAAAGCTTTTATGGATGAGGGGAAAGTAGCAACAGATCCTGTTGGTTTTCCTTTTAAACCAGCAATTGATGCGCCCGGGGGGTTTCTCTTCGAGTGGTGGTCAGTCTTTTGGGATATATTCATTGCAAGGACTAATGAAAAACATTCTGAGCCTGCTGCTGCTTACATTGAGGCTCAACAAATGAAGGCAAGAGAACAACAACTTCAAATGCAACAGTTGCAACTCATGCAGCAAAGGAATGCACAGTTACTGCGTAGAGATTCCAGTCATCCTGGGCTTGGCAGTTCCTTAAATGCTATAAACTCTGAAGGAATGCTGGGGCAGCCATCAGCAAGTGTGTTGGCCATGAAAATGCATGAAGAACGAATGAAGCATTCTCATGCAATGGAATCTGAAGCATCGCCTGCTCTTCTTGATCCAAATAGGATGGCCCTCCTCAAATCAGCTACTGCTAATCAAGGTCAGCTGGTACAAAGCAATTCAGGGAACGTGTCTGCAGCTCTGCAGCATATCCAGTCACGGACACCTTTATCAACTGAAATCAAAGGAGAAGTTAGTTTAGGTGCTGTTCAGAAAAGTTTGCCAATGGATTCCTCAATTTATGGACAAGCAATTTTGCACTCGAAGTCTGGACATGGTGGAGCAGGATCAAATCAAGGTGTCACTGGACTTCCGTTAAAGGGTTGGCCTCTAACAGGAATTGACCCACTGCGACAAAATTTGGGCGTCCAAGTACAGAAACCTAGTCTAGCTCGCCCAAACTATCTTTTAACATCACAGCAGCAACAAGTTTTGGCACAGGCTCAAGCACAAAATACTCTTTCCAATTCAAGTGCATATGGTGACATGGATCCTCGTAGATTTAACAGTATGGCAAGAGGAAATTTGAATTCAAAAGATGGTCAATCTGCTAGAAATGATGGATCTATGTCTTCCCAAGTTCATTCAGGTTCACCAAAGGTGAAGATGCCTCCAATGCAACACTCTTCTTCTCAGCAACATGGGCCTTTACAGCAGCAGCAACTACAGCAGAGCAACAGAAAAAGAAAACAGCATTCTTCATCTGGACCCGCTAATAGCACTGGTACTGGAAACACAGTGGGTCCTTCGCCGAATTCACCACCTTCAACACACACACCCGGTGACGGGATGGATGCAGCGAGTAGTATGCAACATGTGAACAGTGTGCCTAAGACAACAATGATGTATGCTTCGGAAGGAGCAGGTGGTTTTGCATCATCTGCAAATCTGTTGCAGGAAGAAATGGATAGATTTGGAGATGTCGGTGCATTAGATGATAATGTGGAATCATTTTTGTCAAATAATGGATCAGATGGAGGGAACCTCTATGGGTCATTGAAGCCAAATCCATCCGAATGCCAAAAAGAGTCTTCAAAAGGTTTCACTTTTGCTGAGGTGGGTTGCATACGGACAAGGAACAGCAAAGTTATTTGCTGTCACTTTTCTTCAGATGGGAAGTTACTTGCCAGTGCCGGACATGACAAGAAGGTTGTCCTTTGGAACATGGATACCTTGGATACAGAGAGCACCCCTGAAGAACATAAATCTGTTATTACAGATGTTCGATTTAGACCAAATTCATCTCACCTGTTGACTGCTTCAGTTGACCAATCTGTACGCTTGTGGGATGCAGCCGACCCAGGCTATTCTTTGCAACAATATACAGGGCATAGTTCTACTGTTATGTCCCTAGATTTCCACCCTAAGAAGACTGATCTTTTCTGCTTCTGCGATCATGACGACCAAATTCGTTATTTTGATATTAACTCATTCTCCTGCACACGCATCTCCAAGGGTGGTACTGCACAAGTGAGATTTCAACCAAGAACTGGACATCTGTTGGCAGCTGCATCGGACAAAGTCATATCTGTGTTTGATGTCGAAACCGATGCACAAATATACTCTCTGCAGGGACATTCTGATTTTGTAAACTATATCTGCTGGGATGCAACTGGAGACTACTTGGCTTCTGTGAGTCAGAACTTGGTGAAGATTTGGTCTATGGTGTCAGGAGACTGCATTCAAGAGTTCAGCTCCAATGGCAACCAATTTCACTCGTGTGTTTTCCATCCAAGTTATTCAACTCTGCTAGTTGTTGGGGGAATCTCGTCCATAGAGCTGTGGAATATGGCTGAAAACAAGAGGATGACGATTGCTGCGCATGAGAATATAATATCTGCTTTGGCACAATCACCTCTTACTGGAATGGTTGCCTCTGCAAGCCATGACACCTCCGTTAAGTTATGGAAATGA 2391 0.4371 MDADYKCIINMGQSNWEADKMLDVYIHDYLLKRKLHASAKAFMDEGKVATDPVGFPFKPAIDAPGGFLFEWWSVFWDIFIARTNEKHSEPAAAYIEAQQMKAREQQLQMQQLQLMQQRNAQLLRRDSSHPGLGSSLNAINSEGMLGQPSASVLAMKMHEERMKHSHAMESEASPALLDPNRMALLKSATANQGQLVQSNSGNVSAALQHIQSRTPLSTEIKGEVSLGAVQKSLPMDSSIYGQAILHSKSGHGGAGSNQGVTGLPLKGWPLTGIDPLRQNLGVQVQKPSLARPNYLLTSQQQQVLAQAQAQNTLSNSSAYGDMDPRRFNSMARGNLNSKDGQSARNDGSMSSQVHSGSPKVKMPPMQHSSSQQHGPLQQQQLQQSNRKRKQHSSSGPANSTGTGNTVGPSPNSPPSTHTPGDGMDAASSMQHVNSVPKTTMMYASEGAGGFASSANLLQEEMDRFGDVGALDDNVESFLSNNGSDGGNLYGSLKPNPSECQKESSKGFTFAEVGCIRTRNSKVICCHFSSDGKLLASAGHDKKVVLWNMDTLDTESTPEEHKSVITDVRFRPNSSHLLTASVDQSVRLWDAADPGYSLQQYTGHSSTVMSLDFHPKKTDLFCFCDHDDQIRYFDINSFSCTRISKGGTAQVRFQPRTGHLLAAASDKVISVFDVETDAQIYSLQGHSDFVNYICWDATGDYLASVSQNLVKIWSMVSGDCIQEFSSNGNQFHSCVFHPSYSTLLVVGGISSIELWNMAENKRMTIAAHENIISALAQSPLTGMVASASHDTSVKLWK* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00270 796 Pfam LisH 20 46 IPR006594 GO:0005515
Pte6g00270 796 ProSiteProfiles Trp-Asp (WD) repeats profile. 557 589 IPR001680 GO:0005515
Pte6g00270 796 ProSiteProfiles Trp-Asp (WD) repeats profile. 764 796 IPR001680 GO:0005515
Pte6g00270 796 MobiDBLite consensus disorder prediction 330 427 - -
Pte6g00270 796 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 11 796 IPR044716 GO:0003714
Pte6g00270 796 ProSiteProfiles LIS1 homology (LisH) motif profile. 18 50 IPR006594 GO:0005515
Pte6g00270 796 MobiDBLite consensus disorder prediction 315 427 - -
Pte6g00270 796 Pfam WD domain, G-beta repeat 556 589 IPR001680 GO:0005515
Pte6g00270 796 Pfam WD domain, G-beta repeat 763 796 IPR001680 GO:0005515
Pte6g00270 796 Pfam WD domain, G-beta repeat 522 547 IPR001680 GO:0005515
Pte6g00270 796 Pfam WD domain, G-beta repeat 679 713 IPR001680 GO:0005515
Pte6g00270 796 SUPERFAMILY WD40 repeat-like 511 796 IPR036322 GO:0005515
Pte6g00270 796 Gene3D - 643 796 IPR015943 GO:0005515
Pte6g00270 796 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 557 589 - -
Pte6g00270 796 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 764 796 - -
Pte6g00270 796 PRINTS G protein beta WD-40 repeat signature 534 548 IPR020472 -
Pte6g00270 796 PRINTS G protein beta WD-40 repeat signature 783 796 IPR020472 -
Pte6g00270 796 PRINTS G protein beta WD-40 repeat signature 576 590 IPR020472 -
Pte6g00270 796 SMART Lish 18 50 IPR006594 GO:0005515
Pte6g00270 796 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 556 IPR001680 GO:0005515
Pte6g00270 796 Coils Coil 95 115 - -
Pte6g00270 796 SMART WD40_4 716 755 IPR001680 GO:0005515
Pte6g00270 796 SMART WD40_4 636 672 IPR001680 GO:0005515
Pte6g00270 796 SMART WD40_4 550 589 IPR001680 GO:0005515
Pte6g00270 796 SMART WD40_4 508 547 IPR001680 GO:0005515
Pte6g00270 796 SMART WD40_4 757 796 IPR001680 GO:0005515
Pte6g00270 796 SMART WD40_4 675 713 IPR001680 GO:0005515
Pte6g00270 796 SMART WD40_4 593 633 IPR001680 GO:0005515
Pte6g00270 796 ProSitePatterns Trp-Asp (WD) repeats signature. 534 548 IPR019775 -
Pte6g00270 796 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 550 - -
Pte6g00270 796 CDD WD40 519 796 - -
Pte6g00270 796 Gene3D - 498 642 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00270 Pte-Chr6 2818586 2825580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00270 533 781 U-box Gene Family AT2G33340 26.848 3.09e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pte6g00270 WD40 0.065 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00270 - - cave:132165278 1197.57