Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00256 ATGTCCGAAATAGAAGTCTCACGGTCTGAGAAGAAGAATAAGAGTAAAAAGCTAACTGACACTTCGAAAGCCTCCAAAAATGTGGCCGATACTGTATCCAGTGATCAAACTGACTTCATCAAACCTCAGAGCTATCGTAAACCCATTGATTCTTCTGAGTGGCCATTGCTACTCAAAAACTATGATCGTCTTAATGTCCGGACCGGTCATTTCACCCCACTCTCAACTGGGTATTCACCTCTTAAGCGCCCTCTAGCCGAGTACATCAGGTATGGCGTTTTGAACCTCGATAAGCCTTCCAACCCATCGTCACATGAGGTGGTGGCATGGATTAAGCGGATTCTGAGGGTTGAGAAAACTGGGCATAGTGGTACCCTTGATCCTAAGGTTACGGGAAATTTGATAGTTTGTATTGATAAGGCTACTAGATTAGTTAAATCACAGCAGGGTGCTGGGAAAGAGTACGTCTGTGTTGCTCGTTTGCACTCTACTGTGTCGGATGTGGCTAAAGTGGCCTGGGCACTCGAGACATTGACTGGGGCAGTGTTTCAGAGGCCTCCACTGATTTCTGCTGTGAAGAGGCAGCTTAGGATTAGAACTATTTATGAAAGTAAGTTACTTGAGTTTGACCCAGTGAAGAATTTGGTTGTGTTTTGGATTTCTTGTGAAGCTGGGACTTATGTAAGGACAATGTGCGTTCATTTGGGTCTGCTTCTTGGTGTTGGAGGACATATGCAGGAGTTGAGGAGGGTGAGGTCTGGGATATTAGGGGAGAAAGATAACATGGTTACAATGCATGATGTGTTGGATGCTCAATAG 819 0.4493 MSEIEVSRSEKKNKSKKLTDTSKASKNVADTVSSDQTDFIKPQSYRKPIDSSEWPLLLKNYDRLNVRTGHFTPLSTGYSPLKRPLAEYIRYGVLNLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDKATRLVKSQQGAGKEYVCVARLHSTVSDVAKVAWALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEFDPVKNLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGILGEKDNMVTMHDVLDAQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00256 272 MobiDBLite consensus disorder prediction 1 37 - -
Pte6g00256 272 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 58 272 IPR004802 GO:0006396
Pte6g00256 272 Gene3D PUA domain 52 83 IPR036974 GO:0003723
Pte6g00256 272 Gene3D Pseudouridine synthase 84 272 - -
Pte6g00256 272 Pfam TruB family pseudouridylate synthase (N terminal domain) 112 228 IPR002501 GO:0006396
Pte6g00256 272 SMART DKCLD_2 50 108 IPR012960 -
Pte6g00256 272 Pfam tRNA pseudouridylate synthase B C-terminal domain 229 271 IPR032819 -
Pte6g00256 272 CDD PseudoU_synth_hDyskerin 90 272 - -
Pte6g00256 272 FunFam H/ACA ribonucleoprotein complex subunit CBF5 84 272 - -
Pte6g00256 272 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 12 272 IPR004802 GO:0006396
Pte6g00256 272 MobiDBLite consensus disorder prediction 1 23 - -
Pte6g00256 272 Pfam DKCLD (NUC011) domain 52 108 IPR012960 -
Pte6g00256 272 SUPERFAMILY Pseudouridine synthase 52 271 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00256 Pte-Chr6 2693655 2694473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00256 1 272 NAC Transcription Factor Family AT3G57150 78.388 4.62e-146 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00256 K11131 - vvi:100258019 438.728