Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00245 ATGGCTGAAGTAAAACCCGGGGACTGTTGTTTGGAAAATAAACAATCAACTACCGCTTCAAGCTCCTCTGTTTCTGAGAGCTGTGGTACTCCAGTTCCCAAGTCACCAGGAATAGGCAGCCCCGCTTCAAGTTCTCCCTCTCATCGGAGGGCCACTGGACCTATAAGACGAGCCAAGGGTGGTTGGACAGCTGAAGAGGACGAGACGTTAAGAAAAGCTGTTGCTCATTATAGGGGGAAAAGTTGGAAGAAAATAGCTGAGTTCTTCCCAGATAGATCCGAAGTCCAATGTCTACATCGGTGGCAGAAAGTTCTCAATCCAGATCTTGTAAAAGGACCTTGGAGTCCTGAGGAGGATAATACAATTGTTGAGCTGGTGGATAAATATGGACCTACAAAATGGTCACTGATAGCAAAATCTTTGCCTGGTCGCATAGGGAAACAATGCCGAGAGAGGTGGCACAATCACCTTAATCCCAATATAAAAAAGGATGCATGGACTTTAGAGGAGGAACTAGCCCTCATGAATGCTCATCAGATACATGGCAATAAATGGGCTGAAATAGCCAAGGTGTTACCCGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCCCTGAAAAAAAAGTTAGACTTTTATATGGCTACTGGGAAACTTCCCCCAGTAGCCAAAGATAGCTCCCAAACTACTGTCAAAGACACAATTGGGCGTTCTGCAACTAAAACACTTCTTGTCTGTTCAAACAAAGGTTTGGATATCAATGCTGAAACATCATCCCAAACAACAGACGCTAGTAGGCTGGATGGAGGAGCAAAACATCCACTAGAATCCTCAGCAATGCTGAGAGATGCTGTTGATTCTTCAGGTGCAATTCCAAATGTCTCTTCTGATTCTGATGGTGTAGCTTGTAAGCAAACATCATCTAATCTGGATTTAAGCTGCAGTAATTCAGAGTCAGTTCAAAGGTTTGATGGCACTAATGCAGAGTCTAAATTAAAGAATACTAGAGGTAATTCATGGTGTGAGTTTGAGAATTGTACAGACAATGGAGAGACGAATATTGTTAGAGCAATCCCCACTCCTATCTCACCTGAAGGCCCTAACTATGGTTCCTTGTGTTATGAACCACCACACTTTCAGTCTTCAGTACCTCGGGACTCAGTTTCAATGAATATGTTTTGCTTACAGAGTGAATACGGCTCTACTCCTTTATCACCTGCTAGTTTCTTCACACCACCTTGTGCTACGGGCAGTAGTCTAAGCATGCAGAGTCCTGAAGCTATTCCGGCAATTTCAAAATCACTGCAGAGTCCTGAAGCTATTCTGAAAATTGCAGCAGACACTTTCCCGTATACTCCTTCCATATTAAGAAAAAGAAAGGCTGGAGTACAGATTAATGCTACTCCTGAAGAAAAAGACAAGCTTAATGGGAAATGTGTAAAACTATTTCAATTTCTAAACGAACAGGAAAGAACAAAACATGTTACGGAAAATCCTGAATCTATAAGCAAGATTTCATATGAGAGTCCAGTTAGTCATGCTGAAGGTGACCCTATTCCTCCAACTGGTAAGGCCTTCAATGTGTCTCCACCATACCGGTTAAGAACCAAACGAACTGCAGTTTTTAAATCTGTCGAGAAGCAACTTGAATTTGGATGTGACGTAGAGAATTGTGGAAGTGACATCAAAACGATGGAAAAATCTTTAAAGAGTACTGTGGCTGAAGATTGTTCGCAAAACAGGAAGTTGGGAGTGACCTAG 1767 0.4233 MAEVKPGDCCLENKQSTTASSSSVSESCGTPVPKSPGIGSPASSSPSHRRATGPIRRAKGGWTAEEDETLRKAVAHYRGKSWKKIAEFFPDRSEVQCLHRWQKVLNPDLVKGPWSPEEDNTIVELVDKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPNIKKDAWTLEEELALMNAHQIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYMATGKLPPVAKDSSQTTVKDTIGRSATKTLLVCSNKGLDINAETSSQTTDASRLDGGAKHPLESSAMLRDAVDSSGAIPNVSSDSDGVACKQTSSNLDLSCSNSESVQRFDGTNAESKLKNTRGNSWCEFENCTDNGETNIVRAIPTPISPEGPNYGSLCYEPPHFQSSVPRDSVSMNMFCLQSEYGSTPLSPASFFTPPCATGSSLSMQSPEAIPAISKSLQSPEAILKIAADTFPYTPSILRKRKAGVQINATPEEKDKLNGKCVKLFQFLNEQERTKHVTENPESISKISYESPVSHAEGDPIPPTGKAFNVSPPYRLRTKRTAVFKSVEKQLEFGCDVENCGSDIKTMEKSLKSTVAEDCSQNRKLGVT* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00245 588 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Pte6g00245 588 Gene3D - 110 163 - -
Pte6g00245 588 Gene3D - 58 109 - -
Pte6g00245 588 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Pte6g00245 588 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Pte6g00245 588 MobiDBLite consensus disorder prediction 1 64 - -
Pte6g00245 588 SMART sant 162 210 IPR001005 -
Pte6g00245 588 SMART sant 58 107 IPR001005 -
Pte6g00245 588 SMART sant 110 159 IPR001005 -
Pte6g00245 588 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Pte6g00245 588 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Pte6g00245 588 PANTHER MYB PROTEIN-RELATED 59 131 - -
Pte6g00245 588 FunFam Transcription factor MYB3R-2 164 231 - -
Pte6g00245 588 CDD SANT 113 157 IPR001005 -
Pte6g00245 588 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Pte6g00245 588 MobiDBLite consensus disorder prediction 11 30 - -
Pte6g00245 588 FunFam Transcriptional activator Myb isoform A 58 110 - -
Pte6g00245 588 Gene3D - 164 236 - -
Pte6g00245 588 FunFam Transcriptional activator Myb isoform A 111 163 - -
Pte6g00245 588 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Pte6g00245 588 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Pte6g00245 588 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Pte6g00245 588 CDD SANT 62 105 IPR001005 -
Pte6g00245 588 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Pte6g00245 588 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Pte6g00245 588 CDD SANT 165 208 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00245 Pte-Chr6 2621487 2627513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00245 2 571 MYB Transcription Factor Family AT3G09370 44.522 2.37e-139 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g00245 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00245 K09422 - qsa:O6P43_026527 708.753