Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00242 ATGCCTACTTCAACTCTCCTCTGCATTGCTTCATTCCTCTCCCTTTTTGTCCTCGCCACTGCTAGAATCCCAGGAGTTTACACTGGAGGCCCATGGCAGAGTGCCCATGCAACTTTCTATGGCGGTAGTGATGCCTCTGGAACAATGGGTGGTGCTTGTGGGTATGGAAATCTGTACAGCCAAGGGTATGGAGTGAACACAGCTGCACTCAGCACAGCTCTGTTCAACAATGGCTTGAGCTGTGGTGCTTGCTTCGAGATCAAATGTGACCAGAGGCAAGACTCGAGATGGTGCAACCCTGGCAACCCTTCCATCTTAATCACAGCCACCAACTTCTGCCCACCCAACTTTGCTCTTCCCAGTGACAATGGTGGCTGGTGCAACCCTCCACGTCCACACTTTGACCTTGCCATGCCCATGTTCCTCAACATTGCTCAGTACAAAGCGGGAATTGTCCCTGTCTCTTACAGAAGAGTTCCATGCAGAAAGAAAGGAGGGATCAGATTCACAATCACCGGCTTCCGTTACTTCAACTTGGTTTTGGTTACCAACGTCGCAGGTGCAGGAGATATCGTGCGTGTGAGTATTAAGGGCAGTAATACTGGCTGGTTGGGCATGAGCAGGAACTGGGGGCAAAATTGGCAATCCAATTCTATGCTGGTTGGCCAGGCATTGTCCTTTAGGGTGACTGGCAGTGACAAACGCACCTCCACATCAATGAACGTGGCGCCCTCTAATTGGCAGTTCGGTCAGACCTACACAGGAAAGAATTTCCGTTTCTAG 783 0.507 MPTSTLLCIASFLSLFVLATARIPGVYTGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQRQDSRWCNPGNPSILITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLNIAQYKAGIVPVSYRRVPCRKKGGIRFTITGFRYFNLVLVTNVAGAGDIVRVSIKGSNTGWLGMSRNWGQNWQSNSMLVGQALSFRVTGSDKRTSTSMNVAPSNWQFGQTYTGKNFRF* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00242 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Pte6g00242 260 Gene3D - 166 258 IPR036749 -
Pte6g00242 260 FunFam Expansin 166 258 - -
Pte6g00242 260 Pfam Lytic transglycolase 67 156 IPR009009 -
Pte6g00242 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 166 IPR007112 -
Pte6g00242 260 PANTHER EXPANSIN-A15 12 258 IPR002963 GO:0009664
Pte6g00242 260 SMART dpbb_1 67 156 IPR007112 -
Pte6g00242 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Pte6g00242 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Pte6g00242 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Pte6g00242 260 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Pte6g00242 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Pte6g00242 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Pte6g00242 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Pte6g00242 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Pte6g00242 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Pte6g00242 260 Gene3D - 18 162 IPR036908 -
Pte6g00242 260 SUPERFAMILY Barwin-like endoglucanases 31 184 IPR036908 -
Pte6g00242 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Pte6g00242 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Pte6g00242 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Pte6g00242 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Pte6g00242 260 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Pte6g00242 260 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Pte6g00242 260 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Pte6g00242 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Pte6g00242 260 FunFam Expansin 21 162 - -
Pte6g00242 260 CDD DPBB_EXPA_N 31 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00242 Pte-Chr6 2601660 2602995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00242 6 261 Expansin Gene Family AT2G39700 80.078 1.05e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00242 - - gmx:547955 485.723