Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00235 ATGGCGACTGTACCGGGACAATTGATCTGGGAGATAGTGAAGAAGAACAACTGTTTTCTTGTGAAACAGTTCGGTGATGGGACTGCTAAAGTTCAGTTCAGCAAAGAGAGCAACAATCTCTACAACTGTCATTCTTACAAACACTCTGGTCTGGCAAATAAGAAAACTGTTACTATTCAACCCAGCGGGAAGGACCAAGCTGTGTTGCTTGCGACTACCAAGACTAAGAAGCAAAGCAATCCATCAGATCTTCTTCACAAATCCGTCATGAAGAAGGAGTTCAACAGGATGGCAAAGGCAGTGGCGAATCAGGTGGCTGATAACTACTACAGGCCAGACCTCAAGAAGGCAGCTCTTGCCAGGTTGAGTGCTGTCCATCGGAGCTTGAAGGTTGCCAAGTCTGGTTTGAAGAAGAGGAACAGACAAAATGTTAAGATCAGTGGAAGGAAATGA 453 0.4525 MATVPGQLIWEIVKKNNCFLVKQFGDGTAKVQFSKESNNLYNCHSYKHSGLANKKTVTIQPSGKDQAVLLATTKTKKQSNPSDLLHKSVMKKEFNRMAKAVANQVADNYYRPDLKKAALARLSAVHRSLKVAKSGLKKRNRQNVKISGRK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00235 150 FunFam 60S ribosomal protein L28 5 133 - -
Pte6g00235 150 Gene3D - 6 133 - -
Pte6g00235 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Pte6g00235 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00235 Pte-Chr6 2562247 2564947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00235 1 142 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 78.873 4.47e-80 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00235 K02903 - jre:109007896 256.529