Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00227 ATGGATGGTTTGAGTTGGGAGGCCTCACAACTAGTTTCAAGTATTCCGAATTCATGGAGCAATCACCAACAGAATCTTCAAGCAAGCTTCTTGATGTCCTGCTCAAATTCGGGGGCCTTCAATTCAACACAAGAGCTGCAAAAAGTTCAAACATCTCAAGGCTGTGTGAATTCCTCTAGAGCACAAGTTATAAGCCAAATGGTGGAGCTACCTGCAGCTACATCAAATATAGCAAGTGTTGTAACAGATAGAATATTGTTACAACCACAAGGAGCTACAAAATTAGCAGCAGATGAGATCCTCTTGGAAAAATCTGGAACTGGAACAAGTTGGGGTGAAGCTTTCACTTCTCAGTCGCTTCCTTCCCTCCCAACATGTATGCCGCACAAGAATCAGCAACTGCAGGTTGCCGATGGGGAGGTTCTTGCTGCCACTGGCTCTCTTGATCAGTCACTAGATTGCTTGCTCTCAGCTACCAATAGCAACACGGGAAATTCTGTTGAAGATGATGGGATCTCCTTGATTCTTTCTGATTGTAGAAACTTATGGAGCTTTGGAAATTATGGCAGTGCAGTGTCATCAGGAGAGTCTGATAGCAATGCTGGTAATCCCAAAAAAGAGATGCCATTCCCACTGAATGAACTTGATGAAACTGCTGTGTCTCAGTGCTCTTCCGACCAACTGGTCAATAATTCTAAGCAAGAGTCTAAGAAGCCTTATTCAATGAAGAGAAGCCATGATCAAGTGGATCCTTACCTCAATATCCTTCAGAATAATACTTCTAACAGTACTGAAGGTTGTTTTAGACTCATTGCTGAGAATCCACCAAAATCTAAAAAATCCAGATCAGAAAAGCGTCCAAGCTCATCCAACATCAACTTTCAGCAGTCAAGCAACACAACGACAACATCTACTACTGATCAAGAACCTGATCCAGAGGCCATTGCACAAATGAAGGAAATGATCTACCGAGCGGCAGCCTTTAGGCCTGTAAACTTGGGGTTAGAGGTGGTTGAGAAGCCAAAGAGAAAGAATGTGAGGATATCAACAGACCCACAGACAGTTGCTGCAAGGCAAAGGAGAGAGAGGATCAGCGAAAGGATTAGGGCTTTGCAGAGGTTAGTGCCTGGTGGGAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCCAACTACCTCAAGTTCCTTAGATCACAAGTTAAAGCTTTAGAGAGTCTAGGACAACAGAAACCTGATTCATTGAACTCTCCCCCTACTAGCTTTGCTTTTTCTTTCAACACGTCTTTTCCCATGCAACCCCATTTCCCAATCCAAAACCCCAGTCACATCCATCATCCCCAGGGTTGA 1350 0.4407 MDGLSWEASQLVSSIPNSWSNHQQNLQASFLMSCSNSGAFNSTQELQKVQTSQGCVNSSRAQVISQMVELPAATSNIASVVTDRILLQPQGATKLAADEILLEKSGTGTSWGEAFTSQSLPSLPTCMPHKNQQLQVADGEVLAATGSLDQSLDCLLSATNSNTGNSVEDDGISLILSDCRNLWSFGNYGSAVSSGESDSNAGNPKKEMPFPLNELDETAVSQCSSDQLVNNSKQESKKPYSMKRSHDQVDPYLNILQNNTSNSTEGCFRLIAENPPKSKKSRSEKRPSSSNINFQQSSNTTTTSTTDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARQRRERISERIRALQRLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGQQKPDSLNSPPTSFAFSFNTSFPMQPHFPIQNPSHIHHPQG* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00227 449 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Pte6g00227 449 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 408 IPR036638 GO:0046983
Pte6g00227 449 Gene3D - 353 416 IPR036638 GO:0046983
Pte6g00227 449 SMART finulus 354 403 IPR011598 GO:0046983
Pte6g00227 449 MobiDBLite consensus disorder prediction 287 310 - -
Pte6g00227 449 Pfam Helix-loop-helix DNA-binding domain 358 397 IPR011598 GO:0046983
Pte6g00227 449 MobiDBLite consensus disorder prediction 222 236 - -
Pte6g00227 449 Coils Coil 387 407 - -
Pte6g00227 449 MobiDBLite consensus disorder prediction 273 310 - -
Pte6g00227 449 MobiDBLite consensus disorder prediction 222 246 - -
Pte6g00227 449 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 160 443 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00227 Pte-Chr6 2479119 2480757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00227 151 448 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 54.870 2.85e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte6g00227 HLH 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00227 - - qsa:O6P43_018263 409.838