Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00217 ATGGAGAGAAGGACTGCAAGTGAGGAGTTGTGTCCACAGCTTATTGATTTGATTCCAAATGAGAGAGAGTGGCTAATGAACAAGGATAGAAGTGGAAACCACAAGTCCTCCGAGGAGAGGAAACTGGAGTTACGGCTTGGACCACCGGGAGAGGACTGGACTTCTTCCAAGGACCACACGAGAGAGAGAAGCGAGTCTCTTCTCTCTCTAGGATACTTCTCTTATGTATATCAAAATGGACAGAACACTACCATAGGCACTTTCAACGGTGGCTGTGATAAAGCAGCAGCTGCTGCTGTTTTGTCCTCTCCATGGTGTTTCCAGCAGGGTAGGACCCAGCACAATCAGCAGCTGCAGTTACCGTCAAAGACACAGAGCTTGGCAGTCATGGTGAAGGAGCGTCCACAGGTATGTAGCTCTGAAATGGCAGACTTGAAAAATGGAGGAAAGGAAGCATTTTTGCCATCTTCTGCAATTACAGCTGTGGCTGCTAACAGCTCTCAGAAAAGAACTGCTCCTGGTCCAGTTGTGGGTTGGCCTCCAATTCGATCATTCAGGAAGAATCTTGCAAGCAACAACAACTGTTCAAAACCAAGTGCTGAGTCTCAGCATCAGGATGCTGTTTCGGACAAGACCAGTGGTAAAAGACCTGTAGACACCAGCTGCAGCAAAGGCATGTTTGTCAAGATCAACATGGATGGGGTCCCTATAGGGAGAAAAGTGGACCTCCATGCTTATGGGAACTATGAACAACTCTCTTCCGCGGTTGATGAACTCTTCAGAGGACTCCTTGCAGCTCAAAGAGATTCCTGTGCCGGTGCAATACAGAACAAGGAAGAGGAAGAGAAAGCAATTAGTGGTTTATTGGACGGAAGTGGGGAATATACCCTAGTTTATGAGGATAATGAAGGAGACAGGATGCTGGTTGGAGATGTGCCATGGCACATGTTTGTCTCTACAGTGAAGAGGCTGCGTGTCTTGAAGAGCTCTGAGCTTCCTTCTATTAGCCTTGGCAGTAAGCAAGAGAGGAATCCATCTGCAACTGCTGCATTGAATTGA 1059 0.474 MERRTASEELCPQLIDLIPNEREWLMNKDRSGNHKSSEERKLELRLGPPGEDWTSSKDHTRERSESLLSLGYFSYVYQNGQNTTIGTFNGGCDKAAAAAVLSSPWCFQQGRTQHNQQLQLPSKTQSLAVMVKERPQVCSSEMADLKNGGKEAFLPSSAITAVAANSSQKRTAPGPVVGWPPIRSFRKNLASNNNCSKPSAESQHQDAVSDKTSGKRPVDTSCSKGMFVKINMDGVPIGRKVDLHAYGNYEQLSSAVDELFRGLLAAQRDSCAGAIQNKEEEEKAISGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELPSISLGSKQERNPSATAALN* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00217 352 Pfam AUX/IAA family 42 333 IPR033389 -
Pte6g00217 352 SUPERFAMILY CAD & PB1 domains 218 326 - -
Pte6g00217 352 MobiDBLite consensus disorder prediction 28 61 - -
Pte6g00217 352 FunFam Auxin-responsive protein 220 341 - -
Pte6g00217 352 Gene3D - 220 340 - -
Pte6g00217 352 MobiDBLite consensus disorder prediction 190 207 - -
Pte6g00217 352 ProSiteProfiles PB1 domain profile. 225 334 IPR000270 GO:0005515
Pte6g00217 352 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 39 332 IPR003311 GO:0005634|GO:0006355
Pte6g00217 352 MobiDBLite consensus disorder prediction 190 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00217 Pte-Chr6 2393410 2396825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00217 229 340 B3 DNA Binding Superfamily AT4G23980 32.143 3.67e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte6g00217 AUX_IAA 1e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00217 K14484 - qsa:O6P43_018220 416.772