Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00204 ATGGCAATGTCCTGCAAGGATGGTAGGCACGGAATGGATAACGGAAAGTATGTACGTTATACACCTGAGCAGGTTGAAGCCCTCGAGAGGCTTTATCATGAATGTCCAAAACCCAGTTCGATTCGCCGACAGCAGCTTATTCGCGAGTGCCCGATACTCTCACACATCGAGCCGAAACAAATTAAAGTTTGGTTCCAGAATAGAAGATGTAGAGAGAAGCAGAGAAAAGAATCTTCACGCCTTCAATCCGTGAATAGGAAGTTGACGGCCATGAACAAGCTTCTCATGGAAGAGAATGATAGATTGCAGAAGCAGGTTTCGCAACTTGTGTATGAGAATGGCTACTTCCGTCAGCATGGCCAGAATACTACACTTTCAACTAAAGACACAAGCTGTGAATCTGTGGTGACTAGTGGTCAGCATAATTTGATCGCTCAGCATCCACCAAGGGATGCAAGTCCTGCAGGACTATTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTTGAGTGGGTCCAGATGCCTGGAATGAAGCCTGGTCCGGATTCCGTTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGAGCCTGTGGCCTGGTGGGTCTTGAACCCACAAGGGTCGCAGAAATCCTCAAGGATCGGCAGTCATGGTTCCGTGATTGCAGAGCCGTGGATGTTTTAAATGTGATGCCCACTGCAAATGGTGGAACCATTGAGCTGCTTTACATGCAGCTCTATGCGCCAACAACTTTGGCGCCTGCTCGTGACTTCTGGTTGTTACGATATTCTTCTGTTCTAGAAGATGGCAGCCTTGTGGTCTGCGAGAGGTCACTAAAAAATACTCAAAATGGTCCAAGTATGCCTCCAGTGCAGCATTTTGTGAGAGCTGAGATGCTGCCTAGCGGGTATCTGATTCGCCCTTGTGAAGGAGGTGGCTCCATCATACACATTGTTGATCACATAGACTGGGAGCCTTGGAGTGTACCTGAAGTACTTCGCCCTTTATATGAATCATCAACTGTTTTGGCTCAAAAGACGACAATGGCTGCTTTACGTCAACTGCGGCAGATAGCTCATGAGGTTTCTCAATCTAATGTCACTGGTTGGGGTAGGCGCCCTGCAGCTTTACGAGGACTTGGCCAAAGATTGAGCAGGGGATTTAATGAGGCTCTTAATGGGTTTACTGATGAGGGTTGGTCAATGATGGGCAATGATGGCATGGATGACGTTACGATCCTTGTAAATTCATCTCCTGAAAAATTAATGGCTCTTAATCTGCCCTTTGCTAGTGGATTTCCAGCAGTCAGTAATGCAGTGCTGTGCGCGAAAGCATCAATGCTATTACAGAATGTACCTCCAGCCATTCTCCTTAGGTTTCTCCGGGAGCACAGATCAGGGTGGGCGGACAACAACATTGATGCTTATTCAGCTGCAGCCATTAAAGTTGGTTCTTGTAGCTTGCCAGATTCTCGTATTGGAAGTTATGGCAGTCAAGTAATACTTCCTCTGGCACACACTATTGAGCATGAAGAGTTCCTTGAGGTCATAAAATTGGAAGGGATTGGCCATTCTCCAGAAGACGCACTTATGCCCAGGGAAATGTTTCTTTTGCAACTTTGCAGTGGAATGGATGAAAATGCTGTTGGCACCTGTGCAGAACTAGTATTTGCTCCTATAGATGGTTCTTTTGCTGATGATGCAACCCTTTTGCCTTCTGGTTTCCGGATTATTCCCCTCGATTCTGGCAAGGAGGCTTCCAGTCCAAACCGTACACTCGACCTTGCATCTGTTCTTGATGTTGGGCCTGCTGGAAATAGAGCCTCTAATGACAGTACTGGATCGTCAGGCTGTATGAGATCTGTAATGACAATAGCATTTGAATTTGCATTTGAAAATCATATGCAAGAACATGTAGCAGCCATGGCAAGACAGTATATTCGTAGTATTATATCATCAGTTCAAAGGGTGGCATTAGCACTTTCTCCTTCCCATTTAAGTTCAAATGATGGACTTCGATCACCTCTGGGCACTCCTGAAGCACAAACACTGGCTCGTTGGATCTGCAACAGTTACAGATTCTACTTGGGAACGGAGCTGCTCAAATCTAGCAGTGAAGTGAATGAATCCATCCTTAAGAGCTTGTGGCACCATTCAGATGCAATACTGTGCTGCACCCTGAAGGCGTTGCCGGTTTTCACTTTTGCAAACCAGGCAGGACTTGACATGCTTGAGACTACTTTAGTTGCCCTGCAAGATATCGCTCTGGAGAAGATATTTGATGATCATGGCCGGAAGCTTCTTTGCTCTGAGTTTCCACAGATTATGCAACAGGGTTTTGCTTGTATTCAAGGTTGTATCTGTTTGTCAAGCATGGGCCGCCCAGTTTCTTATGAGAGAGTTGTTGCTTGGAAGGTGTTAAATGAAGAAGAGAATGCTCACTGCATTTGCTTTATGTTTACGAACTGGTCATTTGTGTAA 2514 0.459 MAMSCKDGRHGMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHGQNTTLSTKDTSCESVVTSGQHNLIAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRQSWFRDCRAVDVLNVMPTANGGTIELLYMQLYAPTTLAPARDFWLLRYSSVLEDGSLVVCERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDWEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQIAHEVSQSNVTGWGRRPAALRGLGQRLSRGFNEALNGFTDEGWSMMGNDGMDDVTILVNSSPEKLMALNLPFASGFPAVSNAVLCAKASMLLQNVPPAILLRFLREHRSGWADNNIDAYSAAAIKVGSCSLPDSRIGSYGSQVILPLAHTIEHEEFLEVIKLEGIGHSPEDALMPREMFLLQLCSGMDENAVGTCAELVFAPIDGSFADDATLLPSGFRIIPLDSGKEASSPNRTLDLASVLDVGPAGNRASNDSTGSSGCMRSVMTIAFEFAFENHMQEHVAAMARQYIRSIISSVQRVALALSPSHLSSNDGLRSPLGTPEAQTLARWICNSYRFYLGTELLKSSSEVNESILKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDIALEKIFDDHGRKLLCSEFPQIMQQGFACIQGCICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFTNWSFV* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00204 837 CDD bZIP 68 107 - -
Pte6g00204 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 837 IPR044830 GO:0003700
Pte6g00204 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Pte6g00204 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Pte6g00204 837 CDD START_ArGLABRA2_like 154 370 - -
Pte6g00204 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Pte6g00204 837 SUPERFAMILY Homeodomain-like 15 77 IPR009057 -
Pte6g00204 837 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Pte6g00204 837 Coils Coil 81 112 - -
Pte6g00204 837 Gene3D - 193 378 IPR023393 -
Pte6g00204 837 Gene3D - 10 83 - -
Pte6g00204 837 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Pte6g00204 837 Pfam START domain 160 368 IPR002913 GO:0008289
Pte6g00204 837 SUPERFAMILY Bet v1-like 159 370 - -
Pte6g00204 837 Pfam MEKHLA domain 694 836 IPR013978 -
Pte6g00204 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Pte6g00204 837 SMART START_1 159 369 IPR002913 GO:0008289
Pte6g00204 837 SMART HOX_1 13 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00204 Pte-Chr6 2268350 2275226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00204 1 789 Homeobox Transcription Factor Family AT1G52150 84.217 0.0 1390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte6g00204 START 1.1e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00204 K09338 - cave:132186143 1559.66