Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00203 ATGGAGGTTCCAGAATATTACATGGGAGGCTACTTTGGTGCTGGGGTGGACCCTTTATCCCCCGAGAAACGTCACACTGAGCAGAGATCCGGAGAGAATTTCGTCGATGAGCTACTTGACTTCTCTAATGAAGATGTGATGATAACAGAAGGCTTTTTGGAAAATGTGGATGGGAATTCAACCGACTCTTCCACCATTACCCCCGTGGATAGCTACAATTCGTCTGTTTCCGGTGGTGGTGAAAACCATTTCTGTCTCAACATGGACTCTCGTGGCTTTGCTGACTCTCAATTCTCCGGCGACCTTGGCGTTCCGTACGAAGATTTGGCTCACCTTGAATGGTTATCGAATTTTGTGGAGGACTCATTCTCAACAGAAGATGAGCTGAAAACAATTCACCTTCTCTCCGGTGCCACAGCCAGCAAGATTGCCACCAACCCACATACCCCTGAGTCTTCCTCTTCATGTGAAACTCCTCGAAATGCATCACCATTATTTCACCCAGAAACTCCATTACCGGGCAAAGCTCGGAGTAAGCGTTCACGTGCCGCTCCTGGTGATTGGTCCACCCGTCTCCTCCACGTGGTCAACCCAACGACACCCACTACAAACGATACAATGAAATTCATACCAGTTGACCTGAAATCGATGCATCCCAAATCAACTCCAATTAAGAGAAGGGAAAGTTCACATCCAGACATGGGTTCGGATCGTAAATGCCTCCATTGTGCGACAGAGAAGACGCCACAATGGCGAACTGGACCTATGGGTCCGAAAACACTGTGTAATGCTTGTGGAGTTCGATATAAGTCGGGTCGGTTAGTGCCCGAATACAGACCCGCTGCAAGTCCTACTTTTGTAACTACAAAACACTCAAATTCACATAGGAAGGTTTTGGAGTTGAGGAGACAAAAGGACTTGGCCAGACATCAGCATCATCATCAGCAACAACAATTTCTTAGTCAAACTTCAATTTTCGGAGTATCAAATGGTGGAGATGAGTATTTGGTCCATCATCACAATGGATCAAATTATAGGCACATGATGTAG 1050 0.4648 MEVPEYYMGGYFGAGVDPLSPEKRHTEQRSGENFVDELLDFSNEDVMITEGFLENVDGNSTDSSTITPVDSYNSSVSGGGENHFCLNMDSRGFADSQFSGDLGVPYEDLAHLEWLSNFVEDSFSTEDELKTIHLLSGATASKIATNPHTPESSSSCETPRNASPLFHPETPLPGKARSKRSRAAPGDWSTRLLHVVNPTTPTTNDTMKFIPVDLKSMHPKSTPIKRRESSHPDMGSDRKCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVTTKHSNSHRKVLELRRQKDLARHQHHHQQQQFLSQTSIFGVSNGGDEYLVHHHNGSNYRHMM* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00203 349 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Pte6g00203 349 PIRSF Txn_fac_GATA_plant 17 328 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pte6g00203 349 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Pte6g00203 349 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Pte6g00203 349 MobiDBLite consensus disorder prediction 217 238 - -
Pte6g00203 349 PANTHER GATA TRANSCRIPTION FACTOR 23 312 - -
Pte6g00203 349 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Pte6g00203 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 298 - -
Pte6g00203 349 MobiDBLite consensus disorder prediction 143 161 - -
Pte6g00203 349 FunFam GATA transcription factor 230 317 - -
Pte6g00203 349 MobiDBLite consensus disorder prediction 143 188 - -
Pte6g00203 349 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Pte6g00203 349 Gene3D - 233 317 IPR013088 GO:0006355|GO:0008270
Pte6g00203 349 MobiDBLite consensus disorder prediction 219 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00203 Pte-Chr6 2255996 2257464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00203 96 350 C2C2-Gata Transcription Factor Family AT5G25830 48.214 1.49e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte6g00203 GATA 7.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00203 - - qsa:O6P43_018201 457.603