Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00198 ATGGAATCTAAAGACATGTATCCTCTGTTGTTCTATAATTCAACAATGACAACAAGTACATGTGGTAACACCTCTACATGTTCACTACATTCACTTGCAAACTCTGTTTCCAACACACCGAAACAAGAAGACACTCATAGTACGCAAGAACAAAGCAGAGGCAAGAAAGGCAGACATACTAGGAGGCAGCAAGTTTACCATGGCGTCAGAAAGAGAAATTGGGGCAAATGGGTATCAGAAATTCGCCAGCCTCGCAAGAAATCTCGTATCTGGCTTGGTACTTTTGCTACGGCTGAGATGGCGGCTCGAGCGCATGACGTTGCTGCTCTAAGCATTAAGGGTAAGTCAGCTGTTCTGAATTTTCCAGAGCTAGCTGAGTTGTTGCCTAGACCATCTTCTTTGACACCACGTGACATTCAAGCTGCTGCTTCAGCTGCAGCTGCCATGGTCAAATTTGATCCAGCACAGTCCCCACCATCGTCGTTGTCAATTTCAGAGGCATCTGAGTCAGAGGAGTTGGATGAAATTGTTGAGTTGCCAAATATAGAAGGGAGTATCGACTCGGAAGAATCAACAAATGAATTCATTATGATTGACTCAGGTGATGAATGGGTCTATCCACCCATGGTGTTAGAAGCTGAACTATGTGGTGATTTCTTTGATGAACCTTGGACATTTGAGTTTGAATTATGCAAGCAAACTTGA 705 0.4369 MESKDMYPLLFYNSTMTTSTCGNTSTCSLHSLANSVSNTPKQEDTHSTQEQSRGKKGRHTRRQQVYHGVRKRNWGKWVSEIRQPRKKSRIWLGTFATAEMAARAHDVAALSIKGKSAVLNFPELAELLPRPSSLTPRDIQAAASAAAAMVKFDPAQSPPSSLSISEASESEELDEIVELPNIEGSIDSEESTNEFIMIDSGDEWVYPPMVLEAELCGDFFDEPWTFEFELCKQT* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00198 234 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Pte6g00198 234 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Pte6g00198 234 Pfam AP2 domain 65 114 IPR001471 GO:0003700|GO:0006355
Pte6g00198 234 MobiDBLite consensus disorder prediction 35 65 - -
Pte6g00198 234 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Pte6g00198 234 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Pte6g00198 234 FunFam Ethylene-responsive transcription factor 2 64 123 - -
Pte6g00198 234 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Pte6g00198 234 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Pte6g00198 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 45 185 - -
Pte6g00198 234 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00198 Pte-Chr6 2157541 2158652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00198 30 208 AP2-EREBP Transcription Factor Family AT5G11590 52.284 5.29e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte6g00198 AP2 5.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00198 K09286 - qsa:O6P43_018193 236.113