Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00183 ATGGGGAAGGGAACTGGGAGTTTCGGTAAGCGCCGGAACAAGACCCATACTCTCTGTGTGAGGTGTGGCCGCCGCAGCTTTCATCTTCAGAAGAGTCGCTGTGCTGCTTGTGGTTTCCCTGCTGCTCGCAAGAGAACCTATAACTGGAGTGTGAAAGCGATCCGTCGAAAGACTACCGGTACTGGTAGGATGAGATACTTGCGCCATTTGCCAAGGAGGTTCAAGAGTGGGTTTAGAGAAGGCACTCAAGCTGCACCAAGGAATAAGGGAATAGCTGCTTCAGCTTAA 288 0.5174 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACGFPAARKRTYNWSVKAIRRKTTGTGRMRYLRHLPRRFKSGFREGTQAAPRNKGIAASA* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00183 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Pte6g00183 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Pte6g00183 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Pte6g00183 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 94 - -
Pte6g00183 95 FunFam Ribosomal protein L37 1 87 - -
Pte6g00183 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Pte6g00183 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00183 Pte-Chr6 1893535 1895278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00183 1 96 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 86.458 7.07e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00183 K02922 - zju:107405090 196.052