Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00118 ATGGTACAATCAAAAAAATACAGAGGAGTGAGGCAACGCCACTGGGGTTCATGGGTTTCTGAGATTCGTCACCCCTTACTAAAAAGAAGGGTATGGCTAGGAACATTTGAAAGCGCTGAAGGAGCAGCCCGAGCGTATGATGAGGCTGCTATCTTGATGAATGGTAGAAGTGCCAAAACAAACTTTCCAGAATCCAAAACTGACATAGGAAATGAAAGGAAAACTCCTTCATCTTATTCTTCTGCTGTTCTCAGTGAAAAGCTTAGGAAATGTTACTGCAAATTCCCTTCTCCTCCTCTCACTTGTCTAAGGCTTGACACAGAAAACTGTCACATTGGAGTGTGGCAGAAGAGAGCAGGAGCTCGTTCAGATCATTCCAATTGGGTTATGTTGGTTGAGCTTGAAAGGCAAATGAGTAACAACTCATTACAGTTTTCTGCTGTGCCAAATATACAGAAGATGGAGCATCGTGACAAGTCGGCTGAAGAGGAAAAGCTTGCATTGCAGATGATTGAAGAGCTTCTCCATGGAAATTAA 537 0.4283 MVQSKKYRGVRQRHWGSWVSEIRHPLLKRRVWLGTFESAEGAARAYDEAAILMNGRSAKTNFPESKTDIGNERKTPSSYSSAVLSEKLRKCYCKFPSPPLTCLRLDTENCHIGVWQKRAGARSDHSNWVMLVELERQMSNNSLQFSAVPNIQKMEHRDKSAEEEKLALQMIEELLHGN* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00118 178 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Pte6g00118 178 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pte6g00118 178 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pte6g00118 178 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Pte6g00118 178 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pte6g00118 178 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pte6g00118 178 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 143 - -
Pte6g00118 178 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Pte6g00118 178 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pte6g00118 178 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00118 Pte-Chr6 1163284 1164043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00118 1 179 AP2-EREBP Transcription Factor Family AT1G15360 57.921 5.76e-67 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte6g00118 AP2 4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00118 - - oeu:111387518 232.261