Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g00112 ATGAGAGTATGGCTTGACACTTATGACACTGCTGAAGATGCTGCAAGGGCTTATGATGAAGCAGCATGCATGCTTCGTGGAACCAATACTCGCACCAATTTCTCACGCCGCGTCTATCCGAATCCAAATCTAGCCCTACCTTCAAAAATTTCCAATCTTCTACTTCTGAAACTTAAAGCCAGGATAGAGGCCTCTAACTTTACTGCTCCTTCATCTTCTTTCAACTATATTCTTCATGAGCAAGAAATGATAGAAGACCCCTCGTTTGATACTAGTAGTTATCTGAAGGTGTACCTGCATGAAGATGGTGTCGGTCATGAGAATCATGACGCTGCTAGAAGTAACAGACTTGGTGAAATGAATTTTGAATTTTCAGTGTTTGAGATAGCACAGAAAATGGTAGCAAAAGAGGAGGATAATTCTGGGGAGAACACATCAATAGTTAACGGAATTGTTAAGATGATGAAGTGTGAGCGGAAATTCTCTGCTTCACAAGGTCATGATGAAGTTTGA 513 0.4094 MRVWLDTYDTAEDAARAYDEAACMLRGTNTRTNFSRRVYPNPNLALPSKISNLLLLKLKARIEASNFTAPSSSFNYILHEQEMIEDPSFDTSSYLKVYLHEDGVGHENHDAARSNRLGEMNFEFSVFEIAQKMVAKEEDNSGENTSIVNGIVKMMKCERKFSASQGHDEV* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g00112 170 ProSiteProfiles AP2/ERF domain profile. 1 35 IPR001471 GO:0003700|GO:0006355
Pte6g00112 170 SMART rav1_2 2 41 IPR001471 GO:0003700|GO:0006355
Pte6g00112 170 Gene3D AP2/ERF domain 1 37 IPR036955 GO:0003700|GO:0006355
Pte6g00112 170 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 78 - -
Pte6g00112 170 CDD AP2 2 34 IPR001471 GO:0003700|GO:0006355
Pte6g00112 170 SUPERFAMILY DNA-binding domain 2 36 IPR016177 GO:0003677
Pte6g00112 170 Pfam AP2 domain 2 27 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g00112 Pte-Chr6 1115768 1116635 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g00112 1 77 AP2-EREBP Transcription Factor Family AT5G19790 51.220 7.71e-16 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte6g00112 AP2 2.2e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g00112 K09286 - qsa:O6P43_025506 72.7886